Gene

rbm38

ID
ZDB-GENE-030131-5923
Name
RNA binding motif protein 38
Symbol
rbm38 Nomenclature History
Previous Names
  • fi25e12
  • rnpc1 (1)
  • wu:fi25e12
  • zgc:92336
Type
protein_coding_gene
Location
Chr: 23 Mapping Details/Browsers
Description
Predicted to have mRNA binding activity. Predicted to be involved in mRNA processing and regulation of RNA metabolic process. Predicted to localize to cytosol; nucleus; and ribonucleoprotein complex. Orthologous to human RBM38 (RNA binding motif protein 38).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Shao et al., 2020
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa24252Allele with one point mutationUnknownMissense, Premature StopENU
1 - 1 of 1
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-rbm38
    (2)
    1 - 1 of 1
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    Human Disease
    Associated With rbm38 Human Ortholog
    No data available
    Associated With rbm38 Via Experimental Models
    No data available
    Gene Ontology
    Protein Domains
    Domain, Family, and Site Summary
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Family IPR050886 RNA-binding_regulatory_proteins
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    1 - 4 of 4
    Domain Details Per Protein
    Protein Length Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA-binding_regulatory_proteins RNA recognition motif domain
    UniProtKB:A8KBR7 234
    1 - 1 of 1
    Transcripts
    Genome Browsers
    Genome Build: GRCz11Chromosome: 23
    Type Name Annotation Method Has Havana Data Length (nt) Analysis
    mRNA rbm38-201 (1) Ensembl 2,393 nt
    mRNA rbm38-202 (1) Ensembl 877 nt
    1 - 2 of 2
    Interactions and Pathways
    No data available
    Antibodies
    No data available
    Plasmids
    No data available
    Constructs
    No data available
    Marker Relationships
    Relationship Marker Type Marker Accession Numbers Citations
    Contained inBACCH211-147F12ZFIN Curated Data
    EncodesESTfi25e12
    EncodescDNAMGC:92336
    EncodescDNAMGC:173993ZFIN Curated Data
    EncodescDNAMGC:198264ZFIN Curated Data
    1 - 5 of 5
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    Sequences
    Orthology
    Comparative Orthology
    Alliance
    Gene Tree
    Ensembl
    Species Symbol Chromosome Accession # Evidence
    HumanRBM3820
    Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    MouseRbm382
    Conserved genome location (synteny) (1)
    Amino acid sequence comparison (1)
    Citations
    1 - 10 of 10
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