ZFIN ID: ZDB-GENE-030131-2805
Gene Name: podocalyxin-like
Gene Symbol: podxl    Nomenclature History

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Previous Names: fc18d02, si:dkey-146n1.1, wu:fc18d02

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Involved in pronephric glomerulus morphogenesis. Predicted to localize to the apical plasma membrane and microvillus membrane. Is expressed in cardiovascular system; hindbrain neural keel; pronephros; and yolk syncytial layer. Orthologous to human PODXL (podocalyxin like).
Genome Resources: Alliance (1),  Gene:563365 (1),  Ensembl(GRCz11):ENSDARG00000031228 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-podxl N/A 1
MO2-podxl N/A 1
DISEASE ASSOCIATED WITH podxl HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH podxl VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process pronephric glomerulus morphogenesis (more)
Cellular Component cell projection (more)
GO Terms (all 13)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Family IPR013836 CD34/Podocalyxin
Family IPR017403 Podocalyxin
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA podxl-201 (1)    Ensembl 4160
podxl-202 (1)    Ensembl 766
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES
Name Type Isotype Host Organism Assay Source Publications
Ab1-podxl polyclonal Rabbit IHC 1
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM podxl
Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
tg(-0.2myl7:tdtomato-podxl) myl7 podxlTomato Danio rerio 1 1
Tg(hsp70l:GFP-podxl) hsp70l GFPpodxl Danio rerio 1 4
Tg(myl7:EGFP-podxl) myl7 EGFPpodxl Danio rerio 1 4
MARKER RELATIONSHIPS
podxl Contained in: [BAC] DKEY-146N1 (1) (order this)
podxl Encodes: [EST] eu1088 (1), fc18d02
[cDNA] MGC:158122 (1), MGC:195019 (1), MGC:195035 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001045016 (1) 4227 bp
Genomic GenBank:BX465862 (1) 214562 bp Blast at MegaBLAST
Polypeptide UniProtKB:Q5RHU2 (1) 445 aa
Sequence Clusters UniGene:78276 (1)
Sequence Information (all 27)
ORTHOLOGY for podxl ( Chr: 4 )
CITATIONS (36)