Gene
valopa
- ID
- ZDB-GENE-000427-4
- Name
- vertebrate ancient long opsin a
- Symbol
- valopa Nomenclature History
- Previous Names
-
- (VAL)-opsin
- va1 (1)
- valop
- (VA)-opsin
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within signal transduction and visual perception. Predicted to be located in membrane. Predicted to be active in photoreceptor outer segment and plasma membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and testis.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 12 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Hang et al., 2016
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Binding_site | IPR027430 | Visual pigments (opsins) retinal binding site |
Domain | IPR017452 | GPCR, rhodopsin-like, 7TM |
Family | IPR000276 | G protein-coupled receptor, rhodopsin-like |
Family | IPR001760 | Opsin |
Family | IPR002206 | Opsin, pineal type |
Family | IPR050125 | G-protein coupled receptor opsins |
Domain Details Per Protein
Protein | Length | GPCR, rhodopsin-like, 7TM | G-protein coupled receptor opsins | G protein-coupled receptor, rhodopsin-like | Opsin | Opsin, pineal type | Visual pigments (opsins) retinal binding site |
---|---|---|---|---|---|---|---|
UniProtKB:Q9IB88
|
377 |
- Genome Browsers
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
valopa-201
(1)
|
Ensembl | 1,845 nt | ||
mRNA |
valopa-202
(1)
|
Ensembl | 933 nt |
Interactions and Pathways
No data available
Plasmids
No data available