FIGURE

Fig. 6

ID

ZDB-FIG-250225-95

Publication

Chen et al., 2025 - Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution

Other Figures

All Figure Page

Back to All Figure Page

Fig. 6

MES sublineages and lineage-specific regulatory networks. (A) A UMAP plot shows MES subclusters. Cells are colored by subclusters. (B) A set of UMAP plots divided from A by time points. (C) A set of UMAP plots with embedded RNA expression of marker genes. (D) A genome browser view generated with Signac CoveragePlot displays pseudobulk snATAC-seq signals for each subcluster around the cdh11 gene. Annotations at the bottom indicate the transcript region, ATAC-seq peaks, and peak-to-gene links. Violin plot on the right side shows the normalized RNA expression levels of cdh11 across each cluster. Tracks and violin plots are colored by subclusters. (E) A scatter plot shows the top TFs in the MES_3 and MES_5 subclusters, ranked by their eigenvector centrality scores. (F) A dot plot showing RNA expression of mef2cb and lmx1ba across subclusters.

Expression Data

Expression Detail

Antibody Labeling

Phenotype Data

Phenotype Detail

Acknowledgments

This image is the copyrighted work of the attributed author or publisher, and ZFIN has permission only to display this image to its users. Additional permissions should be obtained from the applicable author or publisher of the image. Full text @ Genome Res.