Genomic Feature

ipm1

ID
ZDB-ALT-210813-1
Name
ipm1
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Cell Biology of Neural Development
Current Source
Other Pages
Notes
Comment Citation
this allele
is expected to behave as a functional null. 		Davison et al., 2021
Genome Browser
Genome Build: GRCz11Chromosome: 1
Variants
Variant Type
Small Deletion
Variant Location
Chr 1: 23784934 - 23784943 (GRCz11) (1) Details
Nucleotide change
TGCGTTGCTC/-
Variant Notes
leads to a protein truncation before the first LRR domain. As a consequence,  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
10 bp deleted in Exon 1 (1)
Transcript Consequence
Frameshift (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CTCCGCGCACGTGAAGATCAGCTCCGCTGGATGTTTATGACCGCATCTCTATCACCAGGTGGCTTTTCAAGAGCGTGTTTTCAAGCGCGTGTCTCCTGTTGGCGTAAATGTGCGCATAAGGTGTTTTGAGAGCCACAAAACAAAAGCGCAGAGCGACAATGCGCGTGCGGGATTAGTTTAAACTTTGGTTTGCTGCGGAATCGTCGGGATTTGGACTCTAAACTCGCGTCGCTGTACAGAAGAGACTACGTAGATCTCAGATGGGAGCGGATCTGGATTGAATTGCAGTTTATTTCCCTTAAAGAAGAAGGGGACATTCCAGCCGGAGGAGATTACAAGTGTTTCCTTTGCAAAGATTATTTGTTCTGACTCCTCTTCTTTTTGGATTTAAAAGTCCTGCGCCTGCTCTGGTGCAGTTGTCGCGCAGGAGGGATTCTGTGTGTTTTATCAGAACTTGAGGAAACAGCGGTGATGTTTGTGTTGAAATCAGTGGTGCTCTG
TGCGTTGCTC/- TGCGGGGCTGGAGCCCAGTCGTGCCCGTCCCAGTGCTCCTGCAGCGGGACAGCGGTGGACTGCCACGGCCAGAGTCTGCGGAGCGTGCCGCGGAACATTCCCCGCAACGTTGAGCGACTGTGAGTGCGCCAAAAACACGATTATAATAATTGATAATTTTCTATTGTAGCAACAGAATATATTATTAATAATTTTGTCAACAAAATAGTGAAAACTGATTTTACACAAACAGTTACAGTTTTTAATATTATTGACAATTTTGATTAACGTGCAAATAGCACTTAGGCTATTCAATTGGCGCATAAGTACAATTAATTGAATTAATGATTTATTAACTGTTGTCATATTAACATATTTACAATAGCTTTAATTGACTTAAAAAAACATTTAATTCTGTGACATTTTTTCACACTCTCATCAGAACAAAACTAGTGTCCTTTCTTATTCCAAGCACGCATGTCTCTATCTGTCTCTAACACCGACTGTCTTTCTGAAGTGGA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
slit2ipm1/ipm1Homozygous♀-/- ♂-/-4 figures from Davison et al., 2021Fig. 3 from Davison et al., 2021
slit2ipm1/ipm1Homozygous♀+/- ♂+/-2 figures from Davison et al., 2021
slit2ipm1/+Heterozygous♀+/- ♂+/-2 figures from Davison et al., 2021
1 - 3 of 3
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 2 of 2
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