Genomic Feature
el543
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 2: 688752 - 688768 (GRCz11) (1) Details
- Nucleotide change
- ACTCCCAGCGAGTTGGG/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 17 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
GGTCCTCCTTGTCCTTCATGGCGTCCTTCTTTTTAAATCGCCGTCGTCGCCTCAAAAAGCTGCCGTTCTCAAACATATTATACGAGTCCGGGTCGAGGGTCCAGTAGCTGCCTTTTCCGGGTTTCTTATCATCGCGTGGAACTTTGACAAAGCACTCGTTCAGGGATAAATTATGCCGGATGCTGTTCTGCCAGCCCTGCTTGTTGTCTCTGTAAAAGGGAAAGCGCTCCATGATGAACTGATAAATACCATTAAGGGTCACCTTTTTGTCCGGGGAGTTCTGGATTGCCATTGTGATGAGCGCAATGTAGCTGTACGGGGGTTTCACCATATCCTTAGGCTGCGGCTGTGGAGTGTATGGCCCATATGCCCTCGCCATGCTGGCGGGGTACTGGTCGTGGGCCGCGTGAGAGTACATGGTCATGGGGGCTGGCATGCCGGTGTACCCCCCTCCGGCGGCGGCTCGGTAATAACTTTGGTCGCTGCTGATGTACGGCACA
ACTCCCAGCGAGTTGGG/- ACTGGAGACGGAATAGCGCGCCTGCATGACTGCTCTCCAAAACGGCGTACAGCTGGCGAAGAACAGTCGTCAAGAAGACTGAAGCAATCCACACACAGACACACACACACACACACAATCCTGCTTGAAATGCGCCTCCTCTGAATCTGGGAATGGGAATCCACCACAGAGTCCACCGTATTTACAAAACCGGACTATTGCACCGGGTGTTGATAAGACTCGCGTACTGGCCACCTCTTTCTCTCGGAGCGCGCATCGGAAAACTTCTAAACGCTAAGCATCGGTCACTACATAATAGTTTTTGCGCACTTCAATACTTTTCCCCTTTTGCTGCCAGTAAGACTCCTCCCAATAATATCTAAGCTGTCCAATGGGAGGTCGGGCCGTGCAAGCAAGCGGCCACACACAAGGTTGAAGAAAAACGAGAGGTGTTGGGACGTCCCAGCCCACCCTGGCCAAACACACACTTCTCCAGACGCTAAAGAACCATAGTTTCTCCG - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| foxc1ael543/el543 | Homozygous | ♀+/- ♂+/- | Fig. 2  from Xu et al., 2018 | ||
| foxc1ael543/el543; foxc1bel620/el620 | Complex | 3 figures from Xu et al., 2018 | 2 figures from Xu et al., 2018 | ||
| foxc1ael543/el543; foxc1bel620/el620; b1212Tg; el559Tg | Complex | Fig. S6 from Xu et al., 2018 | |||
| foxc1ael543/el543; foxc1bel620/el620; el360Tg; el700Tg | Complex | Fig. 6 from Xu et al., 2018 | |||
| foxc1ael543/el543; foxc1bel620/+ | Complex | Fig. 2 from Xu et al., 2018 | |||
| foxc1ael543/+; foxc1bel620/el620 | Complex | Fig. 2 from Xu et al., 2018 | Fig. 5 from Xu et al., 2018 |
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Supplemental Information
- Genotyping protocol
- None
- Xu, P., Yu, H.V., Tseng, K.C., Flath, M., Fabian, P., Segil, N., Crump, J.G. (2021) Foxc1 establishes enhancer accessibility for craniofacial cartilage differentiation. eLIFE. 10:
- Xu, P., Balczerski, B., Ciozda, A., Louie, K., Oralova, V., Huysseune, A., Crump, J.G. (2018) Fox proteins are modular competency factors for facial cartilage and tooth specification. Development (Cambridge, England). 145(12)
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