Genomic Feature

pt30a

ID
ZDB-ALT-180725-4
Name
pt30a
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Tsang Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 25
Variants
Variant Type
Small Deletion
Variant Location
Chr 25: 18330033 - 18330046 (GRCz11) (1) Details
Nucleotide change
AATCGATCTGCACG/-
Variant Notes
-14bp
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
14 bp deleted in Exon 1 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CTGCAAGTAAAACTAAAAGACGTAATAATGACTACTACTGAGTAATTAAAAAATATTATAACCTAAATCAGATACGAATGCAAATGTTTCGATTTAAGAAGCAAAATCACCAAACTCGTTGGGAATGTACGTACCCTCGAGATAGAAAGCCTTGTAGCCCTCGTCCTTCATTCTCCTCAGCAGTAAACCCAACACGGAGCCGCCGTCGATGTTTTCATTCCACTCGCGGCTGTACTCGTCGTACAACACGATCGTGTCCGTCTTGCATCTCCGCGCGAACCTTTCCCTGTCTTCCCCGTTAGAAAGCAGAGACTTGATGGGCAGGTTGCCTTTCTTGAGTCGCCGGAGCATGAGGCTCGGGATGGCCACGTTAATGGCCGTTTCGACGTGCGACGACTCGTACAGCTCTTGCGCTCGGCAGTCCATAACGAGCAAACAGTCTCTGCGCGTTTCTAGCTGCTCCTTCAGCCACTCTACCGTCTTGCTTATGGCCATGACCG
AATCGATCTGCACG/- GGTTTGAACTTATCGAGCATTAGTGAAATACGGTGCGGTACCGTGAGACCTTAAAACTGCGGAGAAGACGCGCTGCAAGAGGCCGTAGACGTCTCAGGCCTGGAGCATTGAGCTTTTTACACGCCAAAGTCTCTTGTGCGCCGTCGAGATGATTAAAATCCTCGTTTTTTGTTTGTTTCGAGAGTCAAGCGCAGCCTCGATCTACTTCCACCCCATTCATGCAACTGTGTGCATTTATCAATGACTCACACTAGCCTGTGAGTGCGCGAGCCACTGACGTTGTCTTCCTATTATATAACCTCTCTTCTCTCGTCGTCGATTTTCGCACGAAGCGCTCTAGATATCCAGTTGAATGTCGATTGCAAAAGCAAAATGCTTCGTATTGTTATTTCCTTTCGATGTTTATCCTGGAGAATGCAACACTGCGTCCTCCGCTCCACAAGTCCGAGATGCGCTCTCTGTCACTGTGAGCTAGTGAATGGATACAAGCGCGAGGCGTT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
dusp6pt30a/pt30aHomozygous♀+/- ♂+/-8 figures with image from 2 publications3 figures with image from Missinato et al., 2018
dusp6pt30a/pt30a; y1TgComplex3 figures with image from Missinato et al., 2018
foxm1sa10708/sa10708; dusp6pt30a/pt30aComplexFig. 3. with image from Zuppo et al., 2023
foxm1sa10708/+; dusp6pt30a/pt30aComplex
foxm1sa10708/+; dusp6pt30a/+Complex
1 - 5 of 5
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 2 of 2
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