Genomic Feature
sdu20
- ID
- ZDB-ALT-180516-4
- Name
- sdu20
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- De-Li Shi Lab
- Current Source
- China Zebrafish Resource Center (CZRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 6: 30658180 - 30658186 (GRCz11) (1) Details
- Nucleotide change
- AATCAGG/CTTTTCACTTTC
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 12 bp inserted / 7 bp deleted in Exon 2 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
GCATTAATCCAATCAATAACACTGATACCACAAAGTTAACCCCAGGTTTAGGAATGTAGGCCTACAGTGTTAAAACTAAAACTTAGAACATAAATTTGCCACCAAAGATTAATTGTTAACCCTGGGTAAATTTTGAGACTGAAGCAAGATAACTTAGGTTTGCCTAGAGTTTAGGGTTAACTAAAAAGCCCTTTAGTTGTCACAGCTTTCTTTCATTTAATGCAATTAATCTGCACTTAGATGTCTAAATGTGAATTTATTGAAATTGTGTTTAAAATTATGAAATTTAATTTATGCTCGAATAATCGTTTTTAATGTGCAATGCATAGATTTGACTCTTACCATCTCCATTTTAAGTTTTCGTATCTTCCCATCGAGACCTTTCTTCTCAGTCTCATTATTGTCAGTCTGATGATGAGAGATCATCTTGTGCTCTTCTCTCATCCACTTCAGGAGCCCTTCTGGGGTCTTTCTACCCACTTTCAACTCCAGATCTTTCA
AATCAGG/CTTTTCACTTTC AACTGACTCACAGGTATTATTACTCTCCTCCATGATTAGAAAACGGGTCTACATAAAAGAAAAGAAGAAAATGAGTAAAAAAGAAGGAAAATTTTAATTATTGAAAGTTTTATTTTGCGCCCCGCTGATATTTGCTTTATTATGCCTCAAAAGTCTTATGTAACATTGTGGTTATTTGTAAACACATGACAGTCATTCTGCGTTACAGCTAAAATCCGCATATGATCGGAAAAACACACCACATGCGCTAAACGAGCTGCATATCATCATACAATACATTAACATACCTGATTAATATTCTGAACATTCACACGACTGTTTTCTCTCCCGAACGCAGTCTGAATGATCTCCTTCTTCGGTGGGAAACACGGACCACCTGAGCATGATGCGCGTCTCTCGGAAGATCGTCGTTAAAACGCTTCAGATCTACGTGCTCTATACTCTCTGTGCGGATGATGCCATCGCTGTGCTGAGGTGAAGTGTGGATGTTGTGCACGGAT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| lurap1sdu20/sdu20 | Homozygous | ♀-/- | 5 figures  from Cheng et al., 2017 | 2 figures from Cheng et al., 2017 |
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Supplemental Information
- Genotyping protocol
- None
- Li, J.T., Cheng, X.N., Zhang, C., Shi, D.L., Shao, M. (2021) The Adaptor Protein Lurap1 Is Required for Cell Cohesion during Epiboly Movement in Zebrafish. Biology. 10(12):
- Cheng, X.N., Shao, M., Li, J.T., Wang, Y.F., Qi, J., Xu, Z.G., Shi, D.L. (2017) Leucine repeat adaptor protein 1 interacts with Dishevelled to regulate gastrulation cell movements in zebrafish. Nature communications. 8:1353
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