Genomic Feature

ud3

ID
ZDB-ALT-180319-14
Name
ud3
Synonyms
  • Lima (1)
  • LM (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
LeClair Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 9
Variants
Variant Type
Small Deletion
Variant Location
Chr 9: 56259103 - 56259109 (GRCz11) (1) Details
Nucleotide change
GGCAGAG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp deleted in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
ACCTTAAACTGAAATAAACCTGTATAAAACCATATAAACACATGTGAATAAGCTAACATATGCAGGAAAATATCTGAAACAGACCAATCCTCTCTCTAAACTCTGTTTGTGCCGTCTAGTGGAAAATGAAGTGCTTTAGTGAGCTTTGGTGGCCTTCTAGTGTGACTGGAGGAGTGTTTATGACTGTTATGGTTCAGAATATGCGTTAGTTTAGTTCATTATATTCTCTCTGTCTCTCCTGCAAACTGTGAAGACGTCTCAGGAGGTCAAACTTGCTGCAATTATTGAAGTGAACAGAGGTAAATCAGCTGTATAGTAGTGCTGCTGATAATAATCATAATGAACAGAGTGTTGAAGAGTCATCTCTCTCTCTCTCTCTCAGACTGTGCGCTGTGAGCTGTGCGCTGACCTTGGCGAACTCGTCGAAGGTGATCTTCCCGTCCTGGTTGAGGTCCATGGTCCTGCTGATCTCCTGGATGATTTCTCGAACCCGGTACCCC
GGCAGAG/- GGAGATTGGCGGCTTTAAACAGAGCGTTGAGCTCATCTGTGCTGATGTGACCGTTCCCATCCACATCTGCAGGACAAGGTCAAAGGTCAGGCCTCATATACACACTAATGACTTATTCTGTTAACTAAAATAAACTTTAATTTAATAAACAGAAATGAGTTGAATAGGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGCGTGCGCACATGTCTCTGTACTGACCGACTTTAGTGAAGGCCTCTCTGAGCTCCTCCATCTCCTCCGCTGAGATCTGTGCTGCTGCCATCTTCAACCCGCTATGATGATCACCTGATGACCAGAGGACTAGTTAGAGTCAGAACACTAGTTAACCGGAGTCAGGTCACTAATTAACCAGAGTCAGAGCACGTTGATCAGCAGGTGTGTGAGTGTGAGTGAGTCTGCGCTCCTCCTCTG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
lcp1ud3/ud3Homozygous♀+/- ♂+/-Fig. 7 from Kell et al., 2018Fig. 6 from Kell et al., 2018
lcp1ud3/+ (AB)HeterozygousUnknown
1 - 2 of 2
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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