Genomic Feature

ud2

ID
ZDB-ALT-180319-13
Name
ud2
Synonyms
  • Foxtrot (1)
  • FX (1)
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
LeClair Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 9
Variants
Variant Type
Delins
Variant Location
Chr 9: 56259092 - 56259105 (GRCz11) (1) Details
Nucleotide change
CCCGGTACCCCGGC/TCTCTCTCG
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
9 bp inserted / 14 bp deleted in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TAGAGGAGTAAACCTTAAACTGAAATAAACCTGTATAAAACCATATAAACACATGTGAATAAGCTAACATATGCAGGAAAATATCTGAAACAGACCAATCCTCTCTCTAAACTCTGTTTGTGCCGTCTAGTGGAAAATGAAGTGCTTTAGTGAGCTTTGGTGGCCTTCTAGTGTGACTGGAGGAGTGTTTATGACTGTTATGGTTCAGAATATGCGTTAGTTTAGTTCATTATATTCTCTCTGTCTCTCCTGCAAACTGTGAAGACGTCTCAGGAGGTCAAACTTGCTGCAATTATTGAAGTGAACAGAGGTAAATCAGCTGTATAGTAGTGCTGCTGATAATAATCATAATGAACAGAGTGTTGAAGAGTCATCTCTCTCTCTCTCTCTCAGACTGTGCGCTGTGAGCTGTGCGCTGACCTTGGCGAACTCGTCGAAGGTGATCTTCCCGTCCTGGTTGAGGTCCATGGTCCTGCTGATCTCCTGGATGATTTCTCGAA
CCCGGTACCCCGGC/TCTCTCTCG AGAGGGAGATTGGCGGCTTTAAACAGAGCGTTGAGCTCATCTGTGCTGATGTGACCGTTCCCATCCACATCTGCAGGACAAGGTCAAAGGTCAGGCCTCATATACACACTAATGACTTATTCTGTTAACTAAAATAAACTTTAATTTAATAAACAGAAATGAGTTGAATAGGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGCGTGCGCACATGTCTCTGTACTGACCGACTTTAGTGAAGGCCTCTCTGAGCTCCTCCATCTCCTCCGCTGAGATCTGTGCTGCTGCCATCTTCAACCCGCTATGATGATCACCTGATGACCAGAGGACTAGTTAGAGTCAGAACACTAGTTAACCGGAGTCAGGTCACTAATTAACCAGAGTCAGAGCACGTTGATCAGCAGGTGTGTGAGTGTGAGTGAGTCTGCGCTCCTCC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
lcp1ud2/ud2Homozygous♀+/- ♂+/-Fig. 7 from Kell et al., 20182 figures with image from Kell et al., 2018
lcp1ud2/+Heterozygous♀+/- ♂+/-Fig. 5 with image from Kell et al., 2018
lcp1ud2/+ (AB)HeterozygousUnknown
lcp1ud2/ud2; uwm12TgComplexFig. 5 with image from Kell et al., 2018
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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