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General Information
ZIRC
ZFIN ID: ZDB-ALT-180319-12
Genomic Feature: ud1
Synonyms: CH (1), Charlie (1)
Affected Genomic Regions: lcp1 (1)
Type: Indel (1)
Protocol: embryos treated with CRISPR1-lcp1
Lab Of Origin: LeClair Lab
Location: Chr 9: 56259105 - 56259115 (GRCz11) (1) Details
Sequence:
Current Sources:
MUTATION DETAILS
DNA/cDNA Change: 6 bp inserted / 11 bp deleted in Exon 2 (1)
Transcript Consequence: Frameshift, Premature Stop (1)
Protein Consequence: Polypeptide Truncation (1)
FLANKING SEQUENCE (GENOMIC)
CTTAAACTGAAATAAACCTGTATAAAACCATATAAACACATGTGAATAAGCTAACATATGCAGGAAAATATCTGAAACAGACCAATCCTCTCTCTAAACTCTGTTTGTGCCGTCTAGTGGAAAATGAAGTGCTTTAGTGAGCTTTGGTGGCCTTCTAGTGTGACTGGAGGAGTGTTTATGACTGTTATGGTTCAGAATATGCGTTAGTTTAGTTCATTATATTCTCTCTGTCTCTCCTGCAAACTGTGAAGACGTCTCAGGAGGTCAAACTTGCTGCAATTATTGAAGTGAACAGAGGTAAATCAGCTGTATAGTAGTGCTGCTGATAATAATCATAATGAACAGAGTGTTGAAGAGTCATCTCTCTCTCTCTCTCTCAGACTGTGCGCTGTGAGCTGTGCGCTGACCTTGGCGAACTCGTCGAAGGTGATCTTCCCGTCCTGGTTGAGGTCCATGGTCCTGCTGATCTCCTGGATGATTTCTCGAACCCGGTACCCCGG
CAGAGGGAGAT/TACCCC
TGGCGGCTTTAAACAGAGCGTTGAGCTCATCTGTGCTGATGTGACCGTTCCCATCCACATCTGCAGGACAAGGTCAAAGGTCAGGCCTCATATACACACTAATGACTTATTCTGTTAACTAAAATAAACTTTAATTTAATAAACAGAAATGAGTTGAATAGGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGCGTGCGCACATGTCTCTGTACTGACCGACTTTAGTGAAGGCCTCTCTGAGCTCCTCCATCTCCTCCGCTGAGATCTGTGCTGCTGCCATCTTCAACCCGCTATGATGATCACCTGATGACCAGAGGACTAGTTAGAGTCAGAACACTAGTTAACCGGAGTCAGGTCACTAATTAACCAGAGTCAGAGCACGTTGATCAGCAGGTGTGTGAGTGTGAGTGAGTCTGCGCTCCTCCTCTGTCCTGC
NOTES
Comment Citation
The 9 bp sequence "ATCTCCCTC" was replaced by "GGGG". Kell et al., 2018
OTHER ud1 PAGES No links to external sites
GENOTYPES
Zygosity Genotype (Background) Affected Genomic Regions Parental Zygosity
Homozygous lcp1ud1/ud1 lcp1 ♀+/- ♂+/-
Heterozygous lcp1ud1/+ (AB) lcp1 Unknown
lcp1ud1/+ lcp1 ♀+/- ♂+/-
Complex lcp1ud1/ud1 ; uwm12Tg lcp1

CITATIONS  (3)