Genomic Feature

pc26

ID
ZDB-ALT-170622-16
Name
pc26
Synonyms
  • -9+3 (1)
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Peter Currie Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 10
Variants
Variant Type
Delins
Variant Location
Chr 10: 44228944 - 44228952 (GRCz11) (1) Details
Nucleotide change
CTCCCCGAC/TGA
Variant Notes
The allele harbors a 9 bp deletion, and insertion of a premature in-frame stop  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
3 bp inserted / 9 bp deleted in Exon 6 (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
NNNNNNNNCAAAGAAAACAGTTTTTAAAAATATTTTAATGTATATACTCAATAATCTCCTCATTCATATGTGATCATATTTCTCACTTTAGAGCAAATGTTGAATGTAGAATTATGAAATAAAAATGTAAACAAATGCTAAATAAAATGCAAACTGTCTGACGATGCCATTAATAACATTTCTGTTTGCATTACTGAAATGGCTTATGTAATATTGCACTCATATTAATTATGAAAAAGCATAATATGAAACGGTACACTTTTTATTTTGTCCATACGATATATATCATCATATTGCTCAGCTTTACACAGTATTTTAAAGTGCACTGAATAACGTCATGCATGTTCATTATGATGACATATTGCATTATTAATTATTAGCACATGTATTGTTGTTCCCTATTGAGTGAAAACACAGTTTACGGTGAGCGTTACGTTGATCTCTGACATGTCTGACCTGTCTCAGCCACTCAGCTGAAGCCGGACGAGGGCACGCCGGAG
CTCCCCGAC/TGA GGCCGCGTGAGGGTTCGACTCTCCTCTGATCAGTCCATTCATGATGTGTCCCAGTATGAGATCGAAAAGGTAAGTTTCATTCGATGCTGTATTTTTAATGCTTGATTCTGATTGGTCAGTCAGTTCTAGGGATAGTGTTAGTGCCCGCCCACTTTTTCCAGTAGCTCTGGTTTTTGGATGATATATAGGAAACATTCTTAATACACCTTGTTTGGAATTCTTGATTCTGATTGGTCAGTTGTGACATTTCAAAGAAAGCTGTTCCCAGATAACAACCGCTAAATAACACAGGCTCATCTGGGAACTGATGATCACCTTGACCCTCAGTGAATTCGTTCCATAGACGTGTCTCTTACTGTTTGGAGCTGTCTTGTGAATGGATAATACATAGGTTGGTGTGTGCTCCATTCAAACAGTTTCACTTCTGTCAGCTTTGTATTTTTGACTGTTTGGCGCCATCTAGTGGCTGAAAAATGTGTTGGTTAGTGTATCCCTCATCA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
myo18bpc26/pc26 (TU)Homozygous♀+/- ♂+/-4 figures from Berger et al., 2017Fig. 3 from Berger et al., 2017
myo18bpc26/pc26; pc21TgComplexFig. 3 from Berger et al., 2017Fig. 3 from Berger et al., 2017
1 - 2 of 2
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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