Genomic Feature
ck035a
- ID
- ZDB-ALT-151105-5
- Name
- ck035a
- Synonyms
-
- cnu035a (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Cheol-Hee Kim Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 5: 22081944 - 22081954 (GRCz11) (1) Details
- Nucleotide change
- TCTACGTGAGC/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 11 bp deleted (1)
- Transcript Consequence
- Frameshift (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
TGCATGAATTTAATTGTATTATCTTTCCATTTCTAAAGATGCTCTGTGACTAAATTAGTACTTGAATATATCTGTTTAATAAATCTGTATTGTTGAAATGCACCAACATATAATACCCATATTCACTAAGAAATGGATACAAATATTTATTTTCAAAATGGGGTGTACTCAATTATGCAGAGAATTATGCTGAGTGTAATGTTTTTTATGTTTATTATATATACATGACATGCATCAAGTCATAGTGAGTTGTCTTTCTGTATATTAGGTGTGATAGAAAAGTGATTTATTACAAATATAAGTTATTACAAAATATGTAACTAAGATTAACCAATTATCTCATAATATATGTTGCATGCATTCATGTATATGCATTAAGTCAGAAAGAGCAGATGTGATGAATAAACAATAAAGAAATTATAAATGGAGTTCAAATCAAATCTTGTATCACAGATGATCTGTTTACCACGTTAATATCCGCATGAATGAGCCGCAGCTCC
TCTACGTGAGC/- CATTTTCTCTTGCAGCAGAAGATCCATTTCCTGTTTGTACTCTCTCAGGTGCTTTTCTTCTGACTCCAGAGCTTCAAACTCGGTCCTCAGTCTAGATTTGATCTTCTCCATCTGAATTGTCTTATTCCTGTAAACCCACACAAATTAAACTGAGCATCCAGCCACTGCATGACAATGCTATAACAATGCAGCCTGATCTGATCTGGTGCATGTGACTTTAAATGAATAAGACATCTGTATTGTGGTTTCAGTGATGCCATCACAAAATGTTTTAGGCCTATTTTGTGCACATCAATACTTCAGCAGACGATCATTAAAGGCTTTATAAATGATTAAGCTCCGTTGTGCAGGAAATGAACCGTTTGCTATGCAGTTTCGTTCCTAACCACAACAGGATGCCTACACACTTACTAACGCTAAAATAACGGTGTGATCAGAGACTTTGCAGAATTAGTGCGAGACGTTTTCAGATTTAGAGCAAAGCTACTTCTGTTTTATGT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| zc4h2ck035a/ck035a | Homozygous | ♀+/- ♂+/- | 8 figures from 2 publications | 6 figures from 2 publications |
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Supplemental Information
- Genotyping protocol
- None
- Mohd Fahmi, M.S.A., Swain, P., Ramli, A.H., Wan Ibrahim, W.N., Saleh Hodin, N.A., Abu Bakar, N., Tan, Y.S., Mohd Faudzi, S.M., Kim, C.H. (2023) In silico studies, X-ray diffraction analysis and biological investigation of fluorinated pyrrolylated-chalcones in zebrafish epilepsy models. Heliyon. 9:e13685e13685
- Wongkittichote, P., Choi, T.I., Kim, O.H., Riley, K., Koeberl, D., Narayanan, V., Ramsey, K., Balak, C., Schwartz, C., Cueto-Gonzalez, A.M., Munell Casadesus, F., Kim, C.H., Shinawi, M.S. (2022) Expanding allelic and phenotypic spectrum of ZC4H2-related disorder: a novel hypomorphic variant and high prevalence of tethered cord. Clinical genetics. 103(2):167-178
- May, M., Hwang, K.S., Miles, J., Williams, C., Niranjan, T., Kahler, S.G., Chiurazzi, P., Steindl, K., van der Spek, P.J., Swagemakers, S., Mueller, J., Stefl, S., Alexov, E., Ryu, J.I., Choi, J.H., Kim, H.T., Tarpey, P., Neri, G., Holloway, L., Skinner, C., Stevenson, R.E., Dorsky, R.I., Wang, T., Schwartz, C.E., Kim, C.H. (2015) ZC4H2, an XLID Gene, is Required for the Generation of a Specific Subset of CNS Interneurons. Human molecular genetics. 24(17):4848-61
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