Genomic Feature
nju19
Notes
No data available
Variants
- Variant Type
- Insertion
- Variant Location
- Chr 2: 687850 - 687851 (GRCz11) (1) Details
- Nucleotide change
- -/TAGAAAAATC
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 10 bp inserted (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
GAAATACTGGTTTGGTCAAAATTTGCTGCAGTCATACACAAAAGCCCCCGACGTGCGGTAAATGGGCTGGCTCGGGGGAAACGACATTTGACAGCTGTTATTCCCGTTTACCGGCGAATTATTCAGACCGATTCTCTGCGATTCGAACATCTCTCGAACCGAATGGAAGTTCTGCTGCTGCGCTGGGTACGTCGCGCCTAGATGGCCAATGTCTCCGGCCTGGTTCAGGTACCATGAGGCGAGGCGCCCTTGGTGCGGATGGTGGCCCTCCTGGGCCGAGCTCAGATTCCCGTGGCTCAACGACGACGTGGTGGTCGTGATCGAGTAATCAGGCAGAGTTTCGTCCACGGTGGTAGCGGTGGTCCCCAAGTGGCCCGAGCGATCTCCGCCCGCGTACAAGCTCATGGCCTGCATGTTGCAGTGATAGGTGGCGTTGGAGGTAGTCGAGATAGAGTTCTGGCTGCAGGGCGAGCTGTACACGGACGACTGATTGGGAGAATA
-/TAGAAAAATC ATTCAGGGACAACGTGGGTGTTATACCTGTCCGCGAGGGAGCCACGAGAGACGGGGTGAGCTCTCCGGAGCTGTGCGGCGATCCGCGGAGGGAGGTCATGATGTTGTCCACGCTGAAGCCCTGCGCGGGGGCCTGGTGGTGCTGCTCTCCAGCGCTGTCCAGGCTGAGGGAGCGGGTGGAAGGGATGCTGTGCGGGCTGCCGCTCGACATGCTGCTGCTGCTGTCGGGGCTCTCGATCTTCGGGACGGTGCTTAGCGTGGGCGAAACAGCCTGCGGAGGAGTGGACGTGCCGTTCTCGGTTTTAATGTCCTGAATGCGCACGGGCTGAGAGCCAGGCACCGACTGCTCCTGCTCGCGGGCCTGCGGCTGCGCCTGGCGGGACGGCGCCTCTTTAACACCTCGGTCCTCCTTGTCCTTCATGGCGTCCTTCTTTTTAAATCGCCGTCGTCGCCTCAAAAAGCTGCCGTTCTCAAACATATTATACGAGTCCGGGTCGAGGGT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| foxc1anju19/nju19 | Homozygous | ♀+/- ♂+/- | 6 figures from 2 publications | 5 figures from 2 publications | |
| foxc1anju19/nju19; s843Tg | Complex | Fig. 2 from Yue et al., 2017 | 2 figures from Yue et al., 2017 |
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Supplemental Information
- Genotyping protocol
- None
- Duan, X., Shi, Y., Zhao, S., Yao, L., Sheng, J., Liu, D. (2022) Foxc1a regulates zebrafish vascular integrity and brain vascular development through targeting amotl2a and ctnnb1. Microvascular Research. 143:104400
- Yue, Y., Jiang, M., He, L., Zhang, Z., Zhang, Q., Gu, C., Liu, M., Li, N., Zhao, Q. (2017) The transcription factor Foxc1a in zebrafish directly regulates expression of nkx2.5, encoding a transcriptional regulator of cardiac progenitor cells.. The Journal of biological chemistry. 293(2):638-650
- Li, J., Yue, Y., Dong, X., Jia, W., Li, K., Liang, D., Dong, Z., Wang, X., Nan, X., Zhang, Q., Zhao, Q. (2015) Zebrafish foxc1a plays a crucial role in early somitogenesis by restricting the expression of aldh1a2 directly. The Journal of biological chemistry. 290(16):10216-28
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