Genomic Feature

sg32

ID
ZDB-ALT-131107-6
Name
sg32
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Sampath Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 21
Variants
Variant Type
Delins
Variant Location
Chr 21: 21010859 - 21013023 (GRCz11) (1) Details
Nucleotide change
CCGGCCAGCACTCATGACATTCACTTTCCAGAGGACGGTGTAAGAGAAAGAGCTCAGAGACTTTATTTCAATAACTGCGTGTGGATTATTACCTTGATTTGACATGTTTTCCTGCGGGCTCCTGAGCGTAGTTTTGGCCCTCGCGGTCGGCCTGGTGAGCTGCACGGGAAACCTTGCTGGATTTCAAGAGACCCTCAGGAATAAAATGCGAGCAGCTGGCAGAAACGGCGGAGGTCGGGCAGGTCACGGCCGACATCTGACCAGATATCCGCTGTATATGATGCACCTCTACCGGACACTTCTGACTGGAGACGAAAAACATTTCAGCCATGAGAATCCAACTCTTTACGAGTCTGACTCCGTCTTGAGCCTCGTCGCTAAAAGTAAGTATAATTGATTTTTTTACTATTAATTTTCATATTTTTTTATTTAAATAGCTTGAATATATTGTTTTTCTCCTCATAGTAAATGTAAACAACTTCAGTTTACCTCATCGTGAAGTAACGTTAGGCTTTATGATTTAATTAGATCGCGTGTACTTCACAAGTAAATGTATCTACATTTAAGCAAATAATTTAAGTTCAAACCAATAAGCCTAGACGTTGTAGCCTTGATTTGTTTAGCTAGATTAGCCTACTGGTAACCGTGTTATAAGCCAATAAACAAACCTTGCCGCCAGTCATTATCTAAAAAACAAATCTCTTTCGGGTTGATACAAGACCCTTAGTGAGCATTATTTGTAGTTTAGCTGGTTCTGGTCTATTAGCCAAGTCATGTATTATGCTTATTAGTGTGTGTGTATTACCTTTAAGACGTCTGTTTTAAAGTGGCCTGGGCATCAATACACATTTAGACAATAAGAACGTTCTACTTTATTAATTGCTTGTCCCGAACGTGGCCATGTGTGAAGACATCCTTTAAAGATAATTAAGCACCACACATCACTTATCTTTTCTAGACTGTTTACCTGTCTGCCCTAAACACTCTTTTCTTAAATATTTTTTATCCAGGTTGTCATCAGGTTGGTGACAAATTCGCAGTGACATTTGACATGTCCTCCATATCAGCAAGCGATGATGTCCAGCGAGCTGAACTTCGCATTCGGCTTCCGCATCTCAGGTCTGAGTTGGAGGTGGATATTTATCACGCATCTACACCTGAGTGTGAGAGAAGCCCCTGCGAAGAAGTCCGGGTCCACCTCGGAACCTTGAACGCAAACCCGATTAACTCAACCTTCCGCTCCTCTTGGAGGATCTTCAACATCACTGCGCTCCTCAAGTACTGGTTGCACCAGAGTGAGCGTGTGCCGTTTGAGGAACCCACACAAATGCCGCCAATGGCTGAGGGACACAAGAGCGTTCATCATCCTACAGTGAACCGAGTGATGATGGTGGTTTACTCCAAGCAGAACCGGGCAAAGACGTCCACTCTCATCCGGACTGCCGAGCACTCCAAGTATGTAGCTCTGGATCGGGCTGGTGGTGGAAGTGAACCTGTGCCTCGGCGCCACAGAAGGAACCACAGAACTGATGATAGGGTCCGCGATGCAGCAGCAGGGATGATTCCTGGTGTTTCCCATGAAGGTGGAGAGAAGAAACCTCTCTGCAAGAAGGTGGATATGTGGGTGGACTTTGATCAGATTGGTTGGAGCGACTGGATTGTTTATCCAAAGCGTTACAACGCTTATCGGTGTGAAGGCAGTTGTCCCACACCAGTAGATGAAACCTTCACTCCAACAAACCATGCATACATGCAGGTAAGAATCTCTCAGATCTTTGATGATTCCGTTTTCCTCCTGCCAGACTGACTCTAATGTTTGTTATTTTCCCATTTGCAGAGTCTTTTGAAGCTGCACCACCCAGATCGCGTCCCATGCTTGTCCTGCGTACCCACCCGTCTGGCTCCACTCTCCATGCTCTACTATGAGAGTGGCAAGATGGTCATGAGACACCATGAAGGCATGGTTGTTGCAGAATGCGGCTGCCACTGATTCTCCAAACCCCAAAGGAACTCAACTCTAGCACTTTGGATATGCTCCTCGACCCCAAAAATATGTATTTAAGAAAAACTGCTGTCAATTATTCCCACTTGAAATTATTATGGTTTCCTGCACTGAGGCACCTGGATAACTTGATGCTATTATTGAAAGCTTTGCGTGTTTGCCT/CTATTTACAGA
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
11 bp inserted / 2143 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
AAGATTTTATTCCTGGAGTCTACCAAACATATTTGAGAATTTTTATGCTATAATCAGTAAAATCAAGCAAACAATGAGGCGAAACAAATATTCTGTTACAAACCTGGATATTTCCAATGCCATACTTATAACTCGTTTGCATTCTCCAGATATGATGAACAGCCAGAAACGCACTGGCTTCCTCCATTTTCATTCAAACTAAGAAATAACCCAGCATTCAGGGGTGTTTTTCTCCGTTTAATCAAAGTGACATTGATGAACAAATGTAGTCCACTAATATTATTGTTTAGGTACACTTACAAAAGAAACTCCAATACACAGCGCTCGAGGAGAAGAATTAGTGTTTTCACACCTCCTGACGCACAAAAGAGCGCTGGTTTCGATACACGACGGCCCACCAACATGTATGCCTTTATGGATCACAGGGGCCACTTCAAAGACCCAAAACGACCTCACTGACCATCAAAAGACTGCAAGTTTCTATAAGTGAACTTAGATGA
CCGGCCAGCACTCATGACATTCACTTTCCAGAGGACGGTGTAAGAGAAAGAGCTCAGAGACTTTATTTCAATAACTGCGTGTGGATTATTACCTTGATTTGACATGTTTTCCTGCGGGCTCCTGAGCGTAGTTTTGGCCCTCGCGGTCGGCCTGGTGAGCTGCACGGGAAACCTTGCTGGATTTCAAGAGACCCTCAGGAATAAAATGCGAGCAGCTGGCAGAAACGGCGGAGGTCGGGCAGGTCACGGCCGACATCTGACCAGATATCCGCTGTATATGATGCACCTCTACCGGACACTTCTGACTGGAGACGAAAAACATTTCAGCCATGAGAATCCAACTCTTTACGAGTCTGACTCCGTCTTGAGCCTCGTCGCTAAAAGTAAGTATAATTGATTTTTTTACTATTAATTTTCATATTTTTTTATTTAAATAGCTTGAATATATTGTTTTTCTCCTCATAGTAAATGTAAACAACTTCAGTTTACCTCATCGTGAAGTAACGTTAGGCTTTATGATTTAATTAGATCGCGTGTACTTCACAAGTAAATGTATCTACATTTAAGCAAATAATTTAAGTTCAAACCAATAAGCCTAGACGTTGTAGCCTTGATTTGTTTAGCTAGATTAGCCTACTGGTAACCGTGTTATAAGCCAATAAACAAACCTTGCCGCCAGTCATTATCTAAAAAACAAATCTCTTTCGGGTTGATACAAGACCCTTAGTGAGCATTATTTGTAGTTTAGCTGGTTCTGGTCTATTAGCCAAGTCATGTATTATGCTTATTAGTGTGTGTGTATTACCTTTAAGACGTCTGTTTTAAAGTGGCCTGGGCATCAATACACATTTAGACAATAAGAACGTTCTACTTTATTAATTGCTTGTCCCGAACGTGGCCATGTGTGAAGACATCCTTTAAAGATAATTAAGCACCACACATCACTTATCTTTTCTAGACTGTTTACCTGTCTGCCCTAAACACTCTTTTCTTAAATATTTTTTATCCAGGTTGTCATCAGGTTGGTGACAAATTCGCAGTGACATTTGACATGTCCTCCATATCAGCAAGCGATGATGTCCAGCGAGCTGAACTTCGCATTCGGCTTCCGCATCTCAGGTCTGAGTTGGAGGTGGATATTTATCACGCATCTACACCTGAGTGTGAGAGAAGCCCCTGCGAAGAAGTCCGGGTCCACCTCGGAACCTTGAACGCAAACCCGATTAACTCAACCTTCCGCTCCTCTTGGAGGATCTTCAACATCACTGCGCTCCTCAAGTACTGGTTGCACCAGAGTGAGCGTGTGCCGTTTGAGGAACCCACACAAATGCCGCCAATGGCTGAGGGACACAAGAGCGTTCATCATCCTACAGTGAACCGAGTGATGATGGTGGTTTACTCCAAGCAGAACCGGGCAAAGACGTCCACTCTCATCCGGACTGCCGAGCACTCCAAGTATGTAGCTCTGGATCGGGCTGGTGGTGGAAGTGAACCTGTGCCTCGGCGCCACAGAAGGAACCACAGAACTGATGATAGGGTCCGCGATGCAGCAGCAGGGATGATTCCTGGTGTTTCCCATGAAGGTGGAGAGAAGAAACCTCTCTGCAAGAAGGTGGATATGTGGGTGGACTTTGATCAGATTGGTTGGAGCGACTGGATTGTTTATCCAAAGCGTTACAACGCTTATCGGTGTGAAGGCAGTTGTCCCACACCAGTAGATGAAACCTTCACTCCAACAAACCATGCATACATGCAGGTAAGAATCTCTCAGATCTTTGATGATTCCGTTTTCCTCCTGCCAGACTGACTCTAATGTTTGTTATTTTCCCATTTGCAGAGTCTTTTGAAGCTGCACCACCCAGATCGCGTCCCATGCTTGTCCTGCGTACCCACCCGTCTGGCTCCACTCTCCATGCTCTACTATGAGAGTGGCAAGATGGTCATGAGACACCATGAAGGCATGGTTGTTGCAGAATGCGGCTGCCACTGATTCTCCAAACCCCAAAGGAACTCAACTCTAGCACTTTGGATATGCTCCTCGACCCCAAAAATATGTATTTAAGAAAAACTGCTGTCAATTATTCCCACTTGAAATTATTATGGTTTCCTGCACTGAGGCACCTGGATAACTTGATGCTATTATTGAAAGCTTTGCGTGTTTGCCT/CTATTTACAGA TATCTGTAAATAGTAGAGTATGTAAATTACCAAATGTAATAAAATGTTTTCATAATGTTTAATCTTGGGTGTTGTCTGTT  ...
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
ndr1sg32/sg32Homozygous♀+/- ♂+/-Fig. 3 with image from Lim et al., 2013Fig. 3 with image from Lim et al., 2013
ndr1sg32/+HeterozygousUnknownFig. 3 with image from Lim et al., 2013
ndr1cz35/+; ndr1sg32/+ComplexFig. 3 with image from Lim et al., 2013
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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