Gene

vps39

ID
ZDB-GENE-080530-2
Name
VPS39 subunit of HOPS complex
Symbol
vps39 Nomenclature History
Previous Names
  • lbk (1)
  • vam6 (1)
Type
protein_coding_gene
Location
Chr: 17 Mapping Details/Browsers
Description
Involved in developmental pigmentation; eye development; and vesicle-mediated transport. Is expressed in brain; digestive system; head; and integument. Orthologous to human VPS39 (VPS39 subunit of HOPS complex).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from Schonthaler et al., 2008
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
8 figures from Schonthaler et al., 2008
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa9171Allele with one point mutationUnknownPremature StopENU
sa9687Allele with one point mutationUnknownSplice SiteENU
sa14550Allele with one point mutationUnknownPremature StopENU
sa18429Allele with one point mutationUnknownPremature StopENU
t20290Allele with one point mutationUnknownPremature StopENU
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-vps39N/ASchonthaler et al., 2008
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Human Disease
Associated With vps39 Human Ortholog
No data available
Associated With vps39 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001180 Citron homology (CNH) domain
Domain IPR019452 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
Domain IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
Family IPR032914 Vam6/VPS39/TRAP1 family
Homologous_superfamily IPR036322 WD40-repeat-containing domain superfamily
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Domain Details Per Protein
Protein Length Citron homology (CNH) domain Clathrin, heavy chain/VPS, 7-fold repeat Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 Vam6/VPS39/TRAP1 family WD40-repeat-containing domain superfamily
UniProtKB:B0EXK3 875
UniProtKB:A0A8M2B5G7 874
UniProtKB:A0A8N1YZ39 875
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 17
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA vps39-201 (1) Ensembl 6,807 nt
mRNA vps39-202 (1) Ensembl 2,601 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-240M14ZFIN Curated Data
Contained inFosmidCH1073-372I3ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanVPS3915
Amino acid sequence comparison (2)
MouseVps392
Amino acid sequence comparison (2)
Citations