ZFIN is now using GRCz12tu for Genomic Data
Gene
pdzrn3b
- ID
- ZDB-GENE-071022-4
- Name
- PDZ domain containing RING finger 3b
- Symbol
- pdzrn3b Nomenclature History
- Previous Names
-
- pdzrn3
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in neuromuscular junction development and protein ubiquitination. Located in cytoplasm. Is expressed in several structures, including hindbrain neural plate; nervous system; notochord; optic vesicle; and presumptive neural retina. Orthologous to human PDZRN3 (PDZ domain containing ring finger 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017907 | Zinc finger, RING-type, conserved site |
| Domain | IPR001478 | PDZ domain |
| Domain | IPR001841 | Zinc finger, RING-type |
| Domain | IPR003613 | U-box domain |
| Family | IPR051971 | E3 ubiquitin-protein ligase PDZ domain-containing protein |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Homologous_superfamily | IPR036034 | PDZ superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | E3 ubiquitin-protein ligase PDZ domain-containing protein | PDZ domain | PDZ superfamily | U-box domain | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:E7FDW2 | InterPro | 1053 | |||||||
| UniProtKB:A0A8M2BDD2 | InterPro | 772 | |||||||
| UniProtKB:A0AC58JPS7 | InterPro | 1065 | |||||||
| UniProtKB:A0AC58JPU4 | InterPro | 885 | |||||||
| UniProtKB:A0AC58JPW1 | InterPro | 817 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pdzrn3b-201
(1)
|
Ensembl | 4,320 nt | ||
| mRNA |
pdzrn3b-203
(1)
|
Ensembl | 5,753 nt | ||
| mRNA |
pdzrn3b-204
(1)
|
Ensembl | 5,723 nt | ||
| ncRNA |
pdzrn3b-002
(1)
|
Ensembl | 555 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers