ZFIN ID: ZDB-GENE-070820-10

Gene Name:ligase IV, DNA, ATP-dependent
Gene Symbol: lig4

Previous Names: zgc:165595(1)
Nomenclature History

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GENE EXPRESSION:(current status)

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MUTANTS AND TARGETED KNOCKDOWNS:

Mutant line(s):   3 genotypes
Allele(s):   fh302, fh303, unrec_lig4

Phenotype: (current status)

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GENE PRODUCTS:

Gene Ontology

Ontology	GO Term
Biological Process	DNA recombination (more)
Cellular Component	intracellular
Molecular Function	ATP binding (more)

All GO Terms (10)

Protein Families, Domains and Sites:

InterPro:IPR000977 (1) InterPro:IPR001357 (1) InterPro:IPR012308 (1) InterPro:IPR012309 (1) InterPro:IPR012310 (1) InterPro:IPR012340 (1) InterPro:IPR016059 (1) InterPro:IPR021536 (1)

PROSITE:PS00333 (1) PROSITE:PS00697 (1) PROSITE:PS50160 (1) PROSITE:PS50172 (1)

Pfam:PF00533 (1) Pfam:PF01068 (1) Pfam:PF04675 (1) Pfam:PF04679 (1) Pfam:PF11411 (1)

EC:6.5.1.1 (1)

Gene Product Description

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SEGMENT (CLONE AND PROBE) RELATIONSHIPS:

lig4 Contained in	[BAC] CH211-198K9 (1)    (order this)
lig4 Encodes	[cDNA] MGC:165595 (1)    (order this)

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SEQUENCE INFORMATION:

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001103123 (1)	3084 bp	- Select Tool - ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX908780 (1)	199679 bp	- Select Tool - MegaBLAST Ensembl
Polypeptide	UniProtKB:A7E283 (1)	909 aa	- Select Tool - ZFIN BLAST Ensembl SIB BLAST
Sequence Clusters	UniGene:94394 (1)
All Sequence Information (7)

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OTHER  lig4  GENE / MARKER PAGES:

Entrez Gene:569525 (1)

VEGA:OTTDARG00000027128 (1)

Ensembl(Zv8):ENSDARG00000060620 (1)

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MAPPING INFORMATION:

LG:  1    Details

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ORTHOLOGY:

				Evidence
Species	Symbol	Chromosome (Position)	Accession #	AA	CL
Zebrafish	lig4	1
Human	LIG4	13 (q33-q34)	OMIM:601837 Entrez Gene:3981
Mouse	Lig4	Unknown	MGI:1335098 Entrez Gene:319583
Orthology Details

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CITATIONS   (12)