ZFIN is now using GRCz12tu for Genomic Data
Gene
vps13c
- ID
- ZDB-GENE-070426-4
- Name
- vacuolar protein sorting 13 homolog C
- Symbol
- vps13c Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in mitochondrion organization; protein retention in Golgi apparatus; and protein targeting to vacuole. Predicted to act upstream of or within lipid transport. Human ortholog(s) of this gene implicated in Parkinson's disease 23. Orthologous to human VPS13C (vacuolar protein sorting 13 homolog C).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from O'Hare et al., 2016
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Parkinson's disease 23 | Alliance | Parkinson disease 23, autosomal recessive, early onset | 616840 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Vacuolar protein sorting-associated protein 13 | Vacuolar protein sorting-associated protein 13, N-terminal domain | Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain |
|---|---|---|---|---|---|
| UniProtKB:A0A8M9Q2G3 | InterPro | 3695 | |||
| UniProtKB:A0A8M9PZ34 | InterPro | 3711 | |||
| UniProtKB:A0A8M9Q2F4 | InterPro | 3695 | |||
| UniProtKB:A0A8M9QCR6 | InterPro | 3623 | |||
| UniProtKB:A0A8M9QHS1 | InterPro | 3627 | |||
| UniProtKB:A0A8M9PRV5 | InterPro | 3739 | |||
| UniProtKB:A0A8M9PPS2 | InterPro | 3739 | |||
| UniProtKB:A0A8M9QHR8 | InterPro | 3754 | |||
| UniProtKB:A0A8M9QCR2 | InterPro | 3751 | |||
| UniProtKB:A0A8M9Q8M3 | InterPro | 3711 | |||
| UniProtKB:A0A8M9PPR8 | InterPro | 3750 | |||
| UniProtKB:A0A8M9P9K9 | InterPro | 3755 | |||
| UniProtKB:A0A8M9Q2F8 | InterPro | 3743 | |||
| UniProtKB:A0A8M9Q8L8 | InterPro | 3755 | |||
| UniProtKB:A0A8M9PKS2 | InterPro | 3751 | |||
| UniProtKB:A0A8M9PRV0 | InterPro | 3750 | |||
| UniProtKB:A0A8M9P9L4 | InterPro | 3627 | |||
| UniProtKB:A0A8M9Q2E9 | InterPro | 3743 | |||
| UniProtKB:A0A8M9PKS9 | InterPro | 3623 | |||
| UniProtKB:A0AB32THT3 | InterPro | 3754 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
vps13c-201
(1)
|
Ensembl | 13,930 nt | ||
| ncRNA |
vps13c-003
(1)
|
Ensembl | 641 nt | ||
| ncRNA |
vps13c-005
(1)
|
Ensembl | 844 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance