ZFIN is now using GRCz12tu for Genomic Data
Gene
trdmt1
- ID
- ZDB-GENE-041008-138
- Name
- tRNA aspartic acid methyltransferase 1
- Symbol
- trdmt1 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 24 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be active in nucleus. Is expressed in brain; immature eye; and liver. Orthologous to human TRDMT1 (tRNA aspartic acid methyltransferase 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7138158 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Rai et al., 2007
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR031303 | DNA methylase, C-5 cytosine-specific, conserved site |
| Family | IPR001525 | C-5 cytosine methyltransferase |
| Family | IPR050750 | Cytosine-specific C5-methyltransferase |
| Homologous_superfamily | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | C-5 cytosine methyltransferase | Cytosine-specific C5-methyltransferase | DNA methylase, C-5 cytosine-specific, conserved site | S-adenosyl-L-methionine-dependent methyltransferase superfamily |
|---|---|---|---|---|---|---|
| UniProtKB:Q588C1 | InterPro | 381 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
trdmt1-201
(1)
|
Ensembl | 1,326 nt | ||
| ncRNA |
trdmt1-002
(1)
|
Ensembl | 1,007 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers