Gene

polr2eb

ID

ZDB-GENE-040801-83

Name

RNA polymerase II, I and III subunit E, b

Symbol

polr2eb Nomenclature History

Previous Names

polr2e
fk97g10
wu:fk97g10
zgc:101098

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription, DNA-templated. Predicted to localize to RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II subunit E).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7155223 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With polr2eb Human Ortholog

No data available

Associated With polr2eb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020608	RNA polymerase, subunit H/Rpb5, conserved site
Domain	IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal
Domain	IPR005571	RNA polymerase, Rpb5, N-terminal
Family	IPR014381	DNA-directed RNA polymerase subunit Rpo5/Rpb5
Homologous_superfamily	IPR035913	RPB5-like RNA polymerase subunit superfamily
Homologous_superfamily	IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily

Domain Details Per Protein

Protein	Length	DNA-directed RNA polymerase subunit Rpo5/Rpb5	RNA polymerase, Rpb5, N-terminal	RNA polymerase Rpb5, N-terminal domain superfamily	RNA polymerase, subunit H/Rpb5, conserved site	RNA polymerase, subunit H/Rpb5 C-terminal	RPB5-like RNA polymerase subunit superfamily
UniProtKB:Q6DEG5 InterPro	210

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	polr2eb-201 (1) Ensembl	Havana	827 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	polr2eb-002 (1) Ensembl	Havana	552 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	polr2eb-003 (1) Ensembl	Havana	624 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations