ZFIN is now using GRCz12tu for Genomic Data
Gene
prpf38b
- ID
- ZDB-GENE-040426-2878
- Name
- pre-mRNA processing factor 38B
- Symbol
- prpf38b Nomenclature History
- Previous Names
-
- wu:fc43b05
- zgc:63496
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human PRPF38B (pre-mRNA processing factor 38B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7146689 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR005037 | Pre-mRNA-splicing factor 38 |
Domain Details Per Protein
| Protein | Additional Resources | Length | Pre-mRNA-splicing factor 38 |
|---|---|---|---|
| UniProtKB:A0A8M2BIS8 | InterPro | 341 | |
| UniProtKB:Q6P7Y3 | InterPro | 501 | |
| UniProtKB:A0A8M3AXI1 | InterPro | 390 | |
| UniProtKB:A0A8M2BIP6 | InterPro | 378 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
prpf38b-202
(1)
|
Ensembl | 1,229 nt | ||
| mRNA |
prpf38b-201
(1)
|
Ensembl | 2,188 nt | ||
| ncRNA |
prpf38b-003
(1)
|
Ensembl | 777 nt | ||
| ncRNA |
prpf38b-004
(1)
|
Ensembl | 777 nt | ||
| ncRNA |
prpf38b-005
(1)
|
Ensembl | 731 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers