Gene

trnau1apb

ID

ZDB-GENE-040426-2386

Name

tRNA selenocysteine 1 associated protein 1b

Symbol

trnau1apb Nomenclature History

Previous Names

trnau1ap
trnau1apl
trspap1 (1)
secp43 (1)
wu:fa56b07
wu:fc12c07
wu:fc69f09
zgc:113964
zgc:77884

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Predicted to have mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to localize to cytosol. Orthologous to human TRNAU1AP (tRNA selenocysteine 1 associated protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:6897971 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With trnau1apb Human Ortholog

No data available

Associated With trnau1apb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034510	SECp43, RNA recognition motif 2
Domain	IPR041085	tRNA selenocysteine 1-associated protein 1, C-terminal
Family	IPR040434	tRNA selenocysteine 1-associated protein 1
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	SECp43, RNA recognition motif 2	tRNA selenocysteine 1-associated protein 1	tRNA selenocysteine 1-associated protein 1, C-terminal
UniProtKB:Q4KM14 InterPro	316
UniProtKB:F1QXG2 InterPro	316
UniProtKB:A0A8M9Q082 InterPro	218

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	trnau1apb-201 (1) Ensembl	Havana	1723 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-002 (1) Ensembl	Havana	2410 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-003 (1) Ensembl	Havana	755 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-004 (1) Ensembl	Havana	802 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-005 (1) Ensembl	Havana	692 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-006 (1) Ensembl	Havana	542 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-007 (1) Ensembl	Havana	748 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-008 (1) Ensembl	Havana	801 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-009 (1) Ensembl	Havana	676 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trnau1apb-010 (1) Ensembl	Havana	818 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations