Gene

caprin1b

ID
ZDB-GENE-040426-2020
Name
cell cycle associated protein 1b
Symbol
caprin1b Nomenclature History
Previous Names
  • caprin1
  • fe25d09
  • ik:tdsubc_2d9
  • wu:fa96f04
  • wu:fe25d09
  • wu:fj66h11
  • xx:tdsubc_2d9
  • zgc:55902
Type
protein_coding_gene
Location
Chr: 18 Mapping Details/Browsers
Description
Predicted to enable RNA binding activity. Predicted to act upstream of or within cell differentiation and negative regulation of translation. Predicted to be active in cytoplasm. Orthologous to human CAPRIN1 (cell cycle associated protein 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa23351Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
sa29071Allele with one point mutationUnknownSplice SiteENU
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Sequence Targeting Reagents
No data available
Human Disease
Associated With caprin1b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Neurodegeneration, childhood-onset, with cerebellar ataxia and cognitive decline 620636
Neurodevelopmental disorder with language impairment, autism, and attention deficit-hyperactivity disorder 620782
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Associated With caprin1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR022070 Cytoplasmic activation/proliferation-associated protein-1 C term
Domain IPR041637 Caprin-1 dimerization domain
Family IPR028816 Caprin
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Domain Details Per Protein
Protein Additional Resources Length Caprin Caprin-1 dimerization domain Cytoplasmic activation/proliferation-associated protein-1 C term
UniProtKB:A0A8M9P113 InterPro 694
UniProtKB:Q802U4 InterPro 695
UniProtKB:A0A8M9PM15 InterPro 694
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 18
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA caprin1b-201 (1)
Ensembl
Ensembl 2,654 nt
ZFIN BLAST
mRNA caprin1b-202 (1)
Ensembl
Ensembl 615 nt
ZFIN BLAST
mRNA caprin1b-203 (1)
Ensembl
Ensembl 595 nt
ZFIN BLAST
mRNA caprin1b-205 (1)
Ensembl
Ensembl 3,373 nt
ZFIN BLAST
ncRNA caprin1b-004 (1)
Ensembl
Ensembl 902 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-110E4ZFIN Curated Data
Contained inBACDKEY-10O6ZFIN Curated Data
EncodesESTfa96f04ZFIN Curated Data
EncodesESTfe25d09
EncodesESTfj66h11ZFIN Curated Data
EncodesESTtdsubc_2d9ZFIN Curated Data
EncodescDNAMGC:55902ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_213068 (1)2667 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CT025900 (1)126992 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:Q802U4 (1)695 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanCAPRIN111
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
TSV
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