Gene
htatsf1
- ID
- ZDB-GENE-040426-1578
- Name
- HIV-1 Tat specific factor 1
- Symbol
- htatsf1 Nomenclature History
- Previous Names
-
- zgc:66252
- Type
- protein_coding_gene
- Location
- Chr: 10 Mapping Details/Browsers
- Description
- Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in chromosome and nucleus. Predicted to be part of U2 snRNP and U2-type spliceosomal complex. Orthologous to human HTATSF1 (HIV-1 Tat specific factor 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:66252 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003954 | RNA recognition motif domain, eukaryotes |
| Domain | IPR034392 | TatSF1-like, RNA recognition motif 1 |
| Family | IPR034393 | TatSF1-like |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain | RNA recognition motif domain, eukaryotes | TatSF1-like | TatSF1-like, RNA recognition motif 1 |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q7SXJ9 | InterPro | 450 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
htatsf1-201
(1)
|
Ensembl | 1,624 nt |
Interactions and Pathways
No data available
Plasmids
No data available