Gene

vat1

ID

ZDB-GENE-030616-178

Name

vesicle amine transport 1

Symbol

vat1 Nomenclature History

Previous Names

si:dz163l24.2

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have cofactor binding activity. Predicted to be involved in oxidation-reduction process. Is expressed in nervous system; neural tube; swim bladder; swim bladder bud; and trigeminal placode. Orthologous to human VAT1 (vesicle amine transport 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7143199 (13 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With vat1 Human Ortholog

No data available

Associated With vat1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR002364	Quinone oxidoreductase/zeta-crystallin, conserved site
Domain	IPR013154	Alcohol dehydrogenase-like, N-terminal
Domain	IPR020843	Polyketide synthase, enoylreductase domain
Family	IPR052100	Synaptic vesicle ATPase and mitochondrial regulator
Homologous_superfamily	IPR011032	GroES-like superfamily
Homologous_superfamily	IPR036291	NAD(P)-binding domain superfamily

Domain Details Per Protein

Protein	Length	Alcohol dehydrogenase-like, N-terminal	GroES-like superfamily	NAD(P)-binding domain superfamily	Polyketide synthase, enoylreductase domain	Quinone oxidoreductase/zeta-crystallin, conserved site	Synaptic vesicle ATPase and mitochondrial regulator
UniProtKB:Q8JFV8 InterPro	484
UniProtKB:Q4KME8 InterPro	484

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	ottdart00000001487 (1)	Havana		1,733 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	vat1-201 (1) Ensembl	Ensembl		4,318 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations