ZFIN is now using GRCz12tu for Genomic Data
Gene
rbm25b
- ID
- ZDB-GENE-030131-5547
- Name
- RNA binding motif protein 25b
- Symbol
- rbm25b Nomenclature History
- Previous Names
-
- rbm25
- fi03e10
- si:ch211-105d18.5
- wu:fi03e10
- zgc:56208 (1)
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Orthologous to human RBM25 (RNA binding motif protein 25).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:56208 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR002483 | PWI domain |
| Domain | IPR034268 | RBM25, RNA recognition motif |
| Family | IPR052768 | RNA-binding protein 25 |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036483 | PWI domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nucleotide-binding alpha-beta plait domain superfamily | PWI domain | PWI domain superfamily | RBM25, RNA recognition motif | RNA-binding domain superfamily | RNA-binding protein 25 | RNA recognition motif domain |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q7ZV58 | InterPro | 731 | |||||||
| UniProtKB:A8DZA0 | InterPro | 830 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
rbm25b-203
(1)
|
Ensembl | 613 nt | ||
| mRNA |
rbm25b-201
(1)
|
Ensembl | 3,094 nt | ||
| mRNA |
rbm25b-202
(1)
|
Ensembl | 2,376 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers