Gene

ssb

ID

ZDB-GENE-030131-223

Name

small RNA binding exonuclease protection factor La

Symbol

ssb Nomenclature History

Previous Names

wu:fb17f11

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in RNA processing. Predicted to localize to nucleus and ribonucleoprotein complex. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human SSB (small RNA binding exonuclease protection factor La).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

18 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55588 (10 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ssb Human Ortholog

No data available

Associated With ssb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR006630	La-type HTH domain
Domain	IPR014886	La protein, xRRM domain
Family	IPR002344	Lupus La protein
Family	IPR045180	La domain containing protein
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036388	Winged helix-like DNA-binding domain superfamily
Homologous_superfamily	IPR036390	Winged helix DNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	La domain containing protein	La protein, xRRM domain	La-type HTH domain	Lupus La protein	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	Winged helix DNA-binding domain superfamily	Winged helix-like DNA-binding domain superfamily
UniProtKB:Q7ZTI0 InterPro	401

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	ssb-201 (1) Ensembl	Ensembl		2,594 nt	Select Tool ZFIN BLAST
mRNA	ssb-202 (1) Ensembl	Ensembl		1,261 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations