Research
General Information
ZIRC
ZFIN: Gene: caspb
ZFIN ID: ZDB-GENE-020812-1

Gene Name:caspase b
Gene Symbol: caspb
Previous Names: caspy2, zgc:109807
Nomenclature History


GENE EXPRESSION:(current status)
Directly submitted expression data: 6 figure(s) (5 images) from Thisse et al., 2004 [MGC:109807]
Wild Type Stages, Structures: Segmentation:20-25 somites (19.00h-22.00h) to Hatching:Long-pec (48.00h-60.00h)
  epidermis, whole organism
Curated microarray expression: GEO  (1)

MUTANTS AND TARGETED KNOCKDOWNS:
Phenotype: (current status)

GENE PRODUCTS:

Gene Ontology
Ontology GO Term
Biological Process positive regulation of apoptosis (more)
Molecular Function cysteine-type endopeptidase activity (more)
All GO Terms (8)

Protein Families, Domains and Sites:
  • InterPro:IPR001309 (1)
  • InterPro:IPR002138 (1)
  • InterPro:IPR002398 (1)
  • InterPro:IPR004020 (1)
  • InterPro:IPR011029 (1)
  • InterPro:IPR011600 (1)
  • InterPro:IPR015917 (1)
  • InterPro:IPR016129 (1)
  • InterPro:IPR017350 (1)
  • PROSITE:PS01121 (1)
  • PROSITE:PS01122 (1)
  • PROSITE:PS50207 (1)
  • PROSITE:PS50208 (1)
  • PROSITE:PS50824 (1)
  • Pfam:PF00656 (1)
  • Pfam:PF02758 (1)
  • Loading Transcript Data...

    Gene Product Description


    SEGMENT (CLONE AND PROBE) RELATIONSHIPS:
    caspb Contained in [BAC] CH211-114L13 (1)    (order this)
    caspb Encodes [EST] fl61f11
    [cDNA] MGC:109807 (1)    (order this) , MGC:191673 (1)    (order this)

    SEQUENCE INFORMATION:
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_152884 (1) 1812 bp
    Genomic GenBank:BX469930 (1) 183380 bp
    Polypeptide UniProtKB:A5PMF4 (1) 404 aa
    Sequence Clusters UniGene:81726 (1)
    All Sequence Information (15)

    OTHER  caspb  GENE / MARKER PAGES:

  • Entrez Gene:259303 (1)
  • VEGA:OTTDARG00000019406 (1)
  • Ensembl(Zv8):ENSDARG00000052039 (1)

  • MAPPING INFORMATION:
      LG:  1    Details   View Map: Merged  Individual Panels

    ORTHOLOGY:
      Evidence
    Species Symbol Chromosome (Position) Accession # AA
    Zebrafish caspb  1
    Human CASP1  11 (q23)
  • OMIM:147678
  • Entrez Gene:834
  • Orthology Details

    CITATIONS   (16)