ZFIN is now using GRCz12tu for Genomic Data
Gene
hoxc11b
- ID
- ZDB-GENE-000822-3
- Name
- homeobox C11b
- Symbol
- hoxc11b Nomenclature History
- Previous Names
-
- Hoxa11
- im:7165141
- Type
- protein_coding_gene
- Location
- Chr: 11 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in caudal fin; pleuroperitoneal region; presumptive telencephalon; pronephric mesoderm; and tail bud. Orthologous to human HOXC11 (homeobox C11).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 17 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu752 (7 images)
- IMAGE:7165141 (9 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Domain of unknown function DUF3528, homeobox protein, eukaryotic | Homedomain-like superfamily | Homeobox, conserved site | Homeodomain | Homeodomain, metazoa |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IDM3 | InterPro | 306 | |||||
| UniProtKB:A0A8M3ARL6 | InterPro | 306 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
hoxc11b-201
(1)
|
Ensembl | 2,649 nt | ||
| mRNA |
hoxc11b-202
(1)
|
Ensembl | 4,372 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers