Research
General Information
ZIRC
ZFIN: Mapping Panel: Loeb/NIH/5000/4000
ZFIN ID: ZDB-REFCROSS-990426-6

Radiation Hybrid Panel: Loeb/NIH/5000/4000 (LN54)

Description: This panel was produced by irradiation of zebrafish AB9 fin fibroblasts prior to fusion with mouse B78 melanoma cells. Zebrafish chromosomes were tagged with the neo resistance gene by stable transfection A pool of more than 400 G418-resistant colonies were used for fusion. DNA samples from the expanded panel can be obtained from the Ekker laboratory. Genotyping of this RH panel has been done with more than 1300 markers. Data on markers, average fragment size, and overall retention rate is available.

Panel Producer: Ekker, Marc Most Recent Update: Mar 22, 2002
Panel type: Radiation Hybrid Radiation Dose: 4000 rads (81 lines); 5000 rads (12 lines)
Current source of genetic material for mapping: Ekker, Marc
Interactive Mapping: Place markers on LN54 panel

LN54 panel: Statistics

Markers:

    SNP (total of 393)
    SSLP (total of 757)
    GENE (total of 394)
    EST (total of 3049)
Total of 4200 markers on panel

Click "View Map" in table at right to see a graphical map of an individual chromosome.

OR

Click to see a list of all mapping panels.
ChromosomeMarkers on chromosome
1 SSLP(27) ; SNP(26) ; GENE(19) ; EST(112) Scoring Data
2 EST(174) ; SNP(11) ; GENE(25) ; SSLP(31) Scoring Data
3 GENE(21) ; SNP(9) ; SSLP(24) ; EST(153) Scoring Data
4 EST(100) ; GENE(12) ; SSLP(25) ; SNP(7) Scoring Data
5 EST(168) ; GENE(22) ; SNP(13) ; SSLP(36) Scoring Data
6 GENE(8) ; SSLP(30) ; SNP(42) ; EST(162) Scoring Data
7 SSLP(39) ; SNP(15) ; EST(150) ; GENE(23) Scoring Data
8 GENE(23) ; SSLP(31) ; SNP(9) ; EST(148) Scoring Data
9 SNP(5) ; SSLP(25) ; EST(56) ; GENE(17) Scoring Data
10 SNP(27) ; GENE(6) ; EST(86) ; SSLP(27) Scoring Data
11 EST(127) ; SSLP(26) ; SNP(15) ; GENE(15) Scoring Data
12 SNP(10) ; GENE(22) ; EST(116) ; SSLP(27) Scoring Data
13 GENE(18) ; SNP(5) ; SSLP(28) ; EST(132) Scoring Data
14 SSLP(39) ; GENE(11) ; SNP(19) ; EST(102) Scoring Data
15 EST(94) ; SSLP(29) ; SNP(23) ; GENE(14) Scoring Data
16 GENE(11) ; SNP(7) ; SSLP(26) ; EST(146) Scoring Data
17 SSLP(31) ; EST(108) ; SNP(17) ; GENE(20) Scoring Data
18 SNP(15) ; EST(95) ; SSLP(32) ; GENE(10) Scoring Data
19 GENE(17) ; EST(138) ; SNP(14) ; SSLP(29) Scoring Data
20 SSLP(40) ; SNP(4) ; GENE(16) ; EST(71) Scoring Data
21 SNP(21) ; GENE(11) ; SSLP(33) ; EST(128) Scoring Data
22 SNP(23) ; EST(129) ; GENE(10) ; SSLP(24) Scoring Data
23 GENE(20) ; SSLP(33) ; SNP(30) ; EST(166) Scoring Data
24 GENE(8) ; EST(105) ; SSLP(35) ; SNP(19) Scoring Data
25 EST(83) ; GENE(15) ; SNP(7) ; SSLP(30) Scoring Data
CITATIONS   (2)