ZFIN is now using GRCz12tu for Genomic Data
Gene
ccdc50a
- ID
- ZDB-GENE-150115-1
- Name
- coiled-coil domain containing 50a
- Symbol
- ccdc50a Nomenclature History
- Previous Names
-
- ccdc50
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma; autosomal dominant nonsyndromic deafness 44; and mantle cell lymphoma. Orthologous to human CCDC50 (coiled-coil domain containing 50).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| autosomal dominant nonsyndromic deafness 44 | Alliance | ?Deafness, autosomal dominant 44 | 607453 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Coiled-coil domain-containing protein 50 | Coiled-coil domain-containing protein 50, N-terminal |
|---|---|---|---|---|
| UniProtKB:A0A8M9Q577 | InterPro | 581 | ||
| UniProtKB:A0A8M9PG00 | InterPro | 309 | ||
| UniProtKB:A0A8M3AN52 | InterPro | 581 | ||
| UniProtKB:A0AB13A9X1 | InterPro | 581 | ||
| UniProtKB:A0A0R4INU8 | InterPro | 309 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ccdc50a-201
(1)
|
Ensembl | 5,962 nt | ||
| mRNA |
ccdc50a-202
(1)
|
Ensembl | 6,043 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers