Gene
vps39
- ID
- ZDB-GENE-080530-2
- Name
- VPS39 subunit of HOPS complex
- Symbol
- vps39 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Description
- Involved in developmental pigmentation; eye development; and vesicle-mediated transport. Is expressed in brain; digestive system; head; and integument. Orthologous to human VPS39 (VPS39 subunit of HOPS complex).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from Schonthaler et al., 2008
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 8 figures from Schonthaler et al., 2008
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001180 | Citron homology (CNH) domain |
| Domain | IPR019452 | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 |
| Domain | IPR019453 | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 |
| Family | IPR032914 | Vam6/VPS39/TRAP1 family |
| Homologous_superfamily | IPR036322 | WD40-repeat-containing domain superfamily |
| Repeat | IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
Domain Details Per Protein
| Protein | Length | Citron homology (CNH) domain | Clathrin, heavy chain/VPS, 7-fold repeat | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 | Vam6/VPS39/TRAP1 family | WD40-repeat-containing domain superfamily |
|---|---|---|---|---|---|---|---|
|
UniProtKB:B0EXK3
|
875 | ||||||
|
UniProtKB:A0A8M2B5G7
|
874 | ||||||
|
UniProtKB:A0A8N1YZ39
|
875 |
Interactions and Pathways
No data available
Plasmids
No data available