Gene

si:ch211-197n1.2

ID

ZDB-GENE-080225-6

Name

si:ch211-197n1.2

Symbol

si:ch211-197n1.2 Nomenclature History

Previous Names

im:7149000 (1)

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Is expressed in central nervous system and tegmentum.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7149000 (11 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With si:ch211-197n1.2 Human Ortholog

No data available

Associated With si:ch211-197n1.2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Domain	IPR002048	EF-hand domain
Domain	IPR015070	DJBP, EF-hand domain
Family	IPR052603	EF-hand calcium-binding domain-containing protein 6
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	DJBP, EF-hand domain	EF-Hand 1, calcium-binding site	EF-hand calcium-binding domain-containing protein 6	EF-hand domain	EF-hand domain pair
UniProtKB:A0A8N7TFC6 InterPro	890
UniProtKB:A0A8M2BFP3 InterPro	889
UniProtKB:A0A8M9P7W0 InterPro	255

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	si:dkey-256e7.5-201 (1) Ensembl	Ensembl		1,375 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations