Gene

tnrc6c2

ID

ZDB-GENE-061207-48

Name

trinucleotide repeat containing adaptor 6C2

Symbol

tnrc6c2 Nomenclature History

Previous Names

si:dkey-10p5.9

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to localize to P-body and nucleoplasm.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tnrc6c2 Human Ortholog

No data available

Associated With tnrc6c2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR015940	Ubiquitin-associated domain
Domain	IPR019486	Argonaute hook domain
Domain	IPR026805	GW182, middle domain
Domain	IPR032226	TNRC6, PABC binding domain
Domain	IPR034927	TNRC6C, RNA recognition motif
Domain	IPR041917	Trinucleotide repeat-containing gene 6C protein, UBA domain
Homologous_superfamily	IPR009060	UBA-like superfamily
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Argonaute hook domain	GW182, middle domain	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	TNRC6C, RNA recognition motif	TNRC6, PABC binding domain	Trinucleotide repeat-containing gene 6C protein, UBA domain	UBA-like superfamily	Ubiquitin-associated domain
UniProtKB:A0A8M3ATC8 InterPro	1571
UniProtKB:A0A8M9PMP3 InterPro	1534
UniProtKB:A0A8M6YYV7 InterPro	1534
UniProtKB:A0A8M9Q4I3 InterPro	1571

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	tnrc6c2-201 (1) Ensembl	Havana	9286 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations