Gene

shpk

ID

ZDB-GENE-060526-357

Name

sedoheptulokinase

Symbol

shpk Nomenclature History

Previous Names

carkl (1)
si:dkey-9e15.3

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have sedoheptulokinase activity. Predicted to be involved in cellular response to lipopolysaccharide and phosphorylation. Predicted to localize to cytosol. Orthologous to human SHPK (sedoheptulokinase).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With shpk Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		[Sedoheptulokinase deficiency]	617213

Associated With shpk Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR018484	Carbohydrate kinase FGGY, N-terminal
Family	IPR042027	Sedoheptulokinase
Homologous_superfamily	IPR043129	ATPase, nucleotide binding domain

Domain Details Per Protein

Protein	Length	ATPase, nucleotide binding domain	Carbohydrate kinase FGGY, N-terminal	Sedoheptulokinase
UniProtKB:X1WH23 InterPro	469
UniProtKB:A0A8M9PYE0 InterPro	288

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	shpk-201 (1) Ensembl	Havana	1460 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations