ZFIN is now using GRCz12tu for Genomic Data
Gene
sec31b
- ID
- ZDB-GENE-060418-2
- Name
- SEC31 homolog B, COPII coat complex component
- Symbol
- sec31b Nomenclature History
- Previous Names
-
- sec31l2 (1)
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in ER to Golgi transport vesicle membrane and endoplasmic reticulum membrane. Orthologous to human SEC31B (SEC31 homolog B, COPII component).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Niu et al., 2012
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Niu et al., 2014
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR019775 | WD40 repeat, conserved site |
| Domain | IPR024298 | Sec16, Sec23-binding domain |
| Family | IPR040251 | Protein transport protein SEC31-like |
| Homologous_superfamily | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| Homologous_superfamily | IPR036322 | WD40-repeat-containing domain superfamily |
| Repeat | IPR001680 | WD40 repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Protein transport protein SEC31-like | Sec16, Sec23-binding domain | WD40 repeat | WD40 repeat, conserved site | WD40-repeat-containing domain superfamily | WD40/YVTN repeat-like-containing domain superfamily |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:E7F114 | InterPro | 1171 | ||||||
| UniProtKB:A0A8M2BKB4 | InterPro | 1174 | ||||||
| UniProtKB:A0AB32U4U0 | InterPro | 1184 | ||||||
| UniProtKB:A0ACD6B5G1 | InterPro | 1171 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
sec31b-201
(1)
|
Ensembl | 4,073 nt | ||
| mRNA |
sec31b-202
(1)
|
Ensembl | 422 nt | ||
| mRNA |
sec31b-204
(1)
|
Ensembl | 4,172 nt | ||
| ncRNA |
sec31b-003
(1)
|
Ensembl | 758 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers