Gene

raver1

ID

ZDB-GENE-050522-99

Name

ribonucleoprotein, PTB-binding 1

Symbol

raver1 Nomenclature History

Previous Names

zgc:112236

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have nucleic acid binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to nucleus. Orthologous to human RAVER1 (ribonucleoprotein, PTB binding 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:112236 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With raver1 Human Ortholog

No data available

Associated With raver1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034633	Ribonucleoprotein PTB-binding 1, RNA recognition motif 1
Domain	IPR034635	Ribonucleoprotein PTB-binding 1, RNA recognition motif 3
Family	IPR050502	Eukaryotic RNA-binding
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Eukaryotic RNA-binding	Nucleotide-binding alpha-beta plait domain superfamily	Ribonucleoprotein PTB-binding 1, RNA recognition motif 1	Ribonucleoprotein PTB-binding 1, RNA recognition motif 3	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:A0A8M9PZA5 InterPro	749
UniProtKB:E7FAA3 InterPro	725
UniProtKB:F1Q561 InterPro	322

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	raver1-201 (1) Ensembl	Ensembl	3,886 nt	Select Tool
mRNA	raver1-202 (1) Ensembl	Ensembl	1,343 nt	Select Tool
mRNA	raver1-203 (1) Ensembl	Ensembl	370 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations