Gene

abcc13

ID

ZDB-GENE-050517-26

Name

ATP-binding cassette, sub-family C (CFTR/MRP), member 13

Symbol

abcc13 Nomenclature History

Previous Names

si:ch211-80n22.6

Type

protein_coding_gene

Location

Chr: 24 Mapping Details/Browsers

Description

Predicted to have ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to localize to plasma membrane. Orthologous to human ABCC13 (ATP binding cassette subfamily C member 13 (pseudogene)).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With abcc13 Human Ortholog

No data available

Associated With abcc13 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017871	ABC transporter-like, conserved site
Domain	IPR003439	ABC transporter-like, ATP-binding domain
Domain	IPR011527	ABC transporter type 1, transmembrane domain
Homologous_superfamily	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily	IPR036640	ABC transporter type 1, transmembrane domain superfamily

Domain Details Per Protein

Protein	Length	ABC transporter-like, ATP-binding domain	ABC transporter-like, conserved site	ABC transporter type 1, transmembrane domain	ABC transporter type 1, transmembrane domain superfamily	P-loop containing nucleoside triphosphate hydrolase
UniProtKB:A0A8M6YVT3 InterPro	1020
UniProtKB:A0A8M6YWE8 InterPro	809
UniProtKB:A0A8M9Q5C8 InterPro	809
UniProtKB:A0A8M6Z491 InterPro	992

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	abcc13-201 (1) Ensembl	Ensembl		6,496 nt	Select Tool ZFIN BLAST
mRNA	abcc13-202 (1) Ensembl	Ensembl		913 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations