Gene

gpatch1

ID

ZDB-GENE-040914-65

Name

G patch domain containing 1

Symbol

gpatch1 Nomenclature History

Previous Names

im:7135982
wu:fc11h11
wu:fj99h08

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in mRNA processing. Predicted to localize to nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7135982 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gpatch1 Human Ortholog

No data available

Associated With gpatch1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000467	G-patch domain
Domain	IPR011666	G patch domain-containing protein, N-terminal

Domain Details Per Protein

Protein	Length	G-patch domain	G patch domain-containing protein, N-terminal
UniProtKB:A0JMC1 InterPro	924
UniProtKB:G1K2G6 InterPro	975

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	gpatch1-201 (1) Ensembl	Havana	3161 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	gpatch1-203 (1) Ensembl	Havana	293 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	gpatch1-002 (1) Ensembl	Havana	742 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations