Gene

nid2b

ID

ZDB-GENE-040724-143

Name

nidogen 2b (osteonidogen)

Symbol

nid2b Nomenclature History

Previous Names

si:ch211-13n20.2
si:dkey-29m11.1

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to be involved in cell-matrix adhesion. Orthologous to human NID2 (nidogen 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With nid2b Human Ortholog

No data available

Associated With nid2b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018097	EGF-like calcium-binding, conserved site
Domain	IPR000716	Thyroglobulin type-1
Domain	IPR000742	EGF-like domain
Domain	IPR001881	EGF-like calcium-binding domain
Domain	IPR003886	NIDO domain
Domain	IPR006605	G2 nidogen/fibulin G2F
Domain	IPR024731	EGF domain
Homologous_superfamily	IPR009017	Green fluorescent protein
Homologous_superfamily	IPR009030	Growth factor receptor cysteine-rich domain superfamily
Homologous_superfamily	IPR011042	Six-bladed beta-propeller, TolB-like
Homologous_superfamily	IPR036857	Thyroglobulin type-1 superfamily
PTM	IPR000152	EGF-type aspartate/asparagine hydroxylation site
Repeat	IPR000033	LDLR class B repeat

Domain Details Per Protein

Protein	Length	EGF domain	EGF-like calcium-binding, conserved site	EGF-like calcium-binding domain	EGF-like domain	EGF-type aspartate/asparagine hydroxylation site	G2 nidogen/fibulin G2F	Green fluorescent protein	Growth factor receptor cysteine-rich domain superfamily	LDLR class B repeat	NIDO domain	Six-bladed beta-propeller, TolB-like	Thyroglobulin type-1	Thyroglobulin type-1 superfamily
UniProtKB:A0A8M9PD71 InterPro	454
UniProtKB:A0A8M9PT02 InterPro	1166

Transcripts

Genome Browsers

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	nid2b-203 (1) Ensembl	Havana	768 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	nid2b-202 (1) Ensembl	Havana	3546 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations