Gene

cbx1b

ID

ZDB-GENE-040625-68

Name

chromobox homolog 1b (HP1 beta homolog Drosophila)

Symbol

cbx1b Nomenclature History

Previous Names

zgc:86924

Type

protein_coding_gene

Location

Chr: 12 Mapping Details/Browsers

Description

Predicted to enable chromatin binding activity and methylated histone binding activity. Predicted to be involved in heterochromatin formation. Predicted to be located in nucleus. Predicted to be active in pericentric heterochromatin. Orthologous to human CBX1 (chromobox 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cbx1b Human Ortholog

No data available

Associated With cbx1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR023779	Chromo domain, conserved site
Domain	IPR000953	Chromo/chromo shadow domain
Domain	IPR008251	Chromo shadow domain
Domain	IPR017984	Chromo domain subgroup
Domain	IPR023780	Chromo domain
Family	IPR051219	Heterochromatin-associated chromo domain-containing protein
Homologous_superfamily	IPR016197	Chromo-like domain superfamily

Domain Details Per Protein

Protein	Length	Chromo/chromo shadow domain	Chromo domain	Chromo domain, conserved site	Chromo domain subgroup	Chromo-like domain superfamily	Chromo shadow domain	Heterochromatin-associated chromo domain-containing protein
UniProtKB:A0A8M2B2K9 InterPro	202
UniProtKB:U3JB43 InterPro	127
UniProtKB:Q6IQ71 InterPro	203

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	cbx1b-201 (1) Ensembl	Ensembl	1,656 nt	Select Tool ZFIN BLAST
mRNA	cbx1b-202 (1) Ensembl	Ensembl	1,704 nt	Select Tool ZFIN BLAST
mRNA	cbx1b-203 (1) Ensembl	Ensembl	1,050 nt	Select Tool ZFIN BLAST
mRNA	cbx1b-204 (1) Ensembl	Ensembl	866 nt	Select Tool ZFIN BLAST
mRNA	cbx1b-205 (1) Ensembl	Ensembl	546 nt	Select Tool ZFIN BLAST
mRNA	cbx1b-206 (1) Ensembl	Ensembl	784 nt	Select Tool ZFIN BLAST
ncRNA	cbx1b-004 (1) Ensembl	Ensembl	529 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations