Gene

prpf38b

ID

ZDB-GENE-040426-2878

Name

pre-mRNA processing factor 38B

Symbol

prpf38b Nomenclature History

Previous Names

wu:fc43b05
zgc:63496

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Predicted to be involved in RNA splicing and mRNA processing. Predicted to localize to precatalytic spliceosome. Orthologous to human PRPF38B (pre-mRNA processing factor 38B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7146689 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With prpf38b Human Ortholog

No data available

Associated With prpf38b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR005037	Pre-mRNA-splicing factor 38

Domain Details Per Protein

Protein	Length	Pre-mRNA-splicing factor 38
UniProtKB:A0A8M2BIS8 InterPro	341
UniProtKB:Q6P7Y3 InterPro	501
UniProtKB:A0A8M3AXI1 InterPro	390
UniProtKB:A0A8M2BIP6 InterPro	378

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	prpf38b-202 (1) Ensembl	Ensembl	1,229 nt	Select Tool
mRNA	prpf38b-201 (1) Ensembl	Ensembl	2,188 nt	Select Tool
ncRNA	prpf38b-003 (1) Ensembl	Ensembl	777 nt	Select Tool
ncRNA	prpf38b-004 (1) Ensembl	Ensembl	777 nt	Select Tool
ncRNA	prpf38b-005 (1) Ensembl	Ensembl	731 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations