Gene

atg13

ID

ZDB-GENE-040426-1149

Name

ATG13 autophagy related 13 homolog (S. cerevisiae)

Symbol

atg13 Nomenclature History

Previous Names

zgc:63526

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to have protein kinase binding activity and protein kinase regulator activity. Predicted to be involved in activation of protein kinase activity; macroautophagy; and piecemeal microautophagy of the nucleus. Predicted to localize to several cellular components, including Atg1/ULK1 kinase complex; extrinsic component of membrane; and phagophore assembly site. Orthologous to human ATG13 (autophagy related 13).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:63526 (1 image)
IMAGE:7138952 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 6 figures from Moss et al., 2021
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With atg13 Human Ortholog

No data available

Associated With atg13 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR018731	Autophagy-related protein 13, N-terminal
Family	IPR040182	Autophagy-related protein 13
Homologous_superfamily	IPR036570	HORMA domain superfamily

Domain Details Per Protein

Protein	Length	Autophagy-related protein 13	Autophagy-related protein 13, N-terminal	HORMA domain superfamily
UniProtKB:Q7SYE0 InterPro	503
UniProtKB:A0A8M2BG96 InterPro	536

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	atg13-203 (1) Ensembl	Havana	848 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	atg13-201 (1) Ensembl	Havana	2463 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	atg13-202 (1) Ensembl	Havana	755 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	atg13-204 (1) Ensembl	Havana	822 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations