ZFIN is now using GRCz12tu for Genomic Data
Gene
arid2
- ID
- ZDB-GENE-030131-6311
- Name
- AT-rich interaction domain 2
- Symbol
- arid2 Nomenclature History
- Previous Names
-
- fi45a01
- si:ch211-132p20.1
- wu:fi45a01
- zgc:152901
- Type
- protein_coding_gene
- Location
- Chr: 4 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA binding activity. Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of brahma complex. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 6; colorectal cancer; hepatocellular carcinoma; and lung cancer. Orthologous to human ARID2 (AT-rich interaction domain 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Coffin-Siris syndrome 6 | Alliance | Coffin-Siris syndrome 6 | 617808 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001606 | ARID DNA-binding domain |
| Domain | IPR003150 | DNA-binding RFX-type winged-helix domain |
| Domain | IPR013087 | Zinc finger C2H2-type |
| Family | IPR052406 | Chromatin Remodeling Complex Component |
| Homologous_superfamily | IPR011989 | Armadillo-like helical |
| Homologous_superfamily | IPR016024 | Armadillo-type fold |
| Homologous_superfamily | IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Homologous_superfamily | IPR036390 | Winged helix DNA-binding domain superfamily |
| Homologous_superfamily | IPR036431 | ARID DNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | ARID DNA-binding domain | ARID DNA-binding domain superfamily | Armadillo-like helical | Armadillo-type fold | Chromatin Remodeling Complex Component | DNA-binding RFX-type winged-helix domain | Winged helix DNA-binding domain superfamily | Winged helix-like DNA-binding domain superfamily | Zinc finger C2H2-type |
|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:F6NXG0 | InterPro | 1572 | |||||||||
| UniProtKB:A0JPE6 | InterPro | 1570 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers