Gene

pabpc1l

ID

ZDB-GENE-030131-5836

Name

poly(A) binding protein, cytoplasmic 1-like

Symbol

pabpc1l Nomenclature History

Previous Names

fi20g03
wu:fi20g03
zgc:55855 (1)

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Localizes to protein-containing complex. Orthologous to human PABPC1L (poly(A) binding protein cytoplasmic 1 like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55855 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pabpc1l Human Ortholog

No data available

Associated With pabpc1l Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein
Domain	IPR003954	RNA recognition motif domain, eukaryote
Domain	IPR034364	PABP, RNA recognition motif 1
Domain	IPR045305	PABP, RNA recognition motif 2
Family	IPR006515	Polyadenylate binding protein, human types 1, 2, 3, 4
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036053	PABC (PABP) domain

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	PABC (PABP) domain	PABP, RNA recognition motif 1	PABP, RNA recognition motif 2	Polyadenylate binding protein, human types 1, 2, 3, 4	Polyadenylate-binding protein/Hyperplastic disc protein	RNA-binding domain superfamily	RNA recognition motif domain	RNA recognition motif domain, eukaryote
UniProtKB:Q803E7 InterPro	620

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	pabpc1l-201 (1) Ensembl	Ensembl	2,547 nt	Select Tool ZFIN BLAST
mRNA	pabpc1l-202 (1) Ensembl	Ensembl	1,768 nt	Select Tool
mRNA	pabpc1l-203 (1) Ensembl	Ensembl	585 nt	Select Tool
mRNA	pabpc1l-204 (1) Ensembl	Ensembl	1,766 nt	Select Tool
mRNA	pabpc1l-205 (1) Ensembl	Ensembl	2,144 nt	Select Tool ZFIN BLAST
mRNA	pabpc1l-206 (1) Ensembl	Ensembl	1,872 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations