Gene

snrnp48

ID

ZDB-GENE-030131-4482

Name

small nuclear ribonucleoprotein 48 (U11/U12)

Symbol

snrnp48 Nomenclature History

Previous Names

fd10a06
wu:fd10a06

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to localize to U12-type spliceosomal complex; cytosol; and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7144375 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from Pei et al., 2018
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With snrnp48 Human Ortholog

No data available

Associated With snrnp48 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR022776	TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
Homologous_superfamily	IPR036236	Zinc finger C2H2 superfamily

Domain Details Per Protein

Protein	Length	TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain	Zinc finger C2H2 superfamily
UniProtKB:A0A0R4IMG9 InterPro	333
UniProtKB:A0A8M9PM81 InterPro	172
UniProtKB:A0A8M9PCY3 InterPro	338

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	snrnp48-201 (1) Ensembl	Havana	1213 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	snrnp48-002 (1) Ensembl	Havana	767 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations