Gene

rbm5

ID

ZDB-GENE-030131-3022

Name

RNA binding motif protein 5

Symbol

rbm5 Nomenclature History

Previous Names

wu:fc25a08
wu:fe06f12

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have RNA binding activity and metal ion binding activity. Predicted to be involved in RNA splicing; regulation of alternative mRNA splicing, via spliceosome; and regulation of apoptotic process. Predicted to localize to integral component of membrane and spliceosomal complex. Orthologous to human RBM5 (RNA binding motif protein 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbm5 Human Ortholog

No data available

Associated With rbm5 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000467	G-patch domain
Domain	IPR000504	RNA recognition motif domain
Domain	IPR001876	Zinc finger, RanBP2-type
Domain	IPR013087	Zinc finger C2H2-type
Domain	IPR034991	RNA-binding protein 5, RNA recognition motif 1
Domain	IPR034993	RNA-binding protein 5, RNA recognition motif 2
Domain	IPR041591	OCRE domain
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036443	Zinc finger, RanBP2-type superfamily

Domain Details Per Protein

Protein	Length	G-patch domain	Nucleotide-binding alpha-beta plait domain superfamily	OCRE domain	RNA-binding domain superfamily	RNA-binding protein 5, RNA recognition motif 1	RNA-binding protein 5, RNA recognition motif 2	RNA recognition motif domain	Zinc finger C2H2-type	Zinc finger, RanBP2-type	Zinc finger, RanBP2-type superfamily
UniProtKB:A0A8M1NE58 InterPro	835

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	rbm5-203 (1) Ensembl	Havana	524 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbm5-202 (1) Ensembl	Havana	1084 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm5-001 (1) Ensembl	Havana	2323 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations