Gene

taf9

ID

ZDB-GENE-030131-204

Name

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor

Symbol

taf9 Nomenclature History

Previous Names

im:7089279
TAF2G (1)
wu:fb16h03
zgc:153410

Type

protein_coding_gene

Location

Chr: 21 Mapping Details/Browsers

Description

Predicted to have transcription factor binding activity and transcription regulatory region DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II and transcription by RNA polymerase II. Predicted to localize to SAGA complex and transcription factor TFIID complex. Orthologous to several human genes including TAF9 (TATA-box binding protein associated factor 9).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7136224 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With taf9 Human Ortholog

No data available

Associated With taf9 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR003162	Transcription initiation factor TAFII31
Homologous_superfamily	IPR009072	Histone-fold

Domain Details Per Protein

Protein	Length	Histone-fold	Transcription initiation factor TAFII31
UniProtKB:F1QDT4 InterPro	248

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	taf9-201 (1) Ensembl	Havana	1041 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	taf9-202 (1) Ensembl	Havana	941 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	taf9-002 (1) Ensembl	Havana	533 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	taf9-003 (1) Ensembl	Havana	562 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	taf9-005 (1) Ensembl	Havana	699 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	taf9-006 (1) Ensembl	Havana	536 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations