ZFIN is now using GRCz12tu for Genomic Data
Gene
ctdsp2
- ID
- ZDB-GENE-030131-184
- Name
- CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
- Symbol
- ctdsp2 Nomenclature History
- Previous Names
-
- fb16c04
- wu:fb16c04
- zgc:77714 (1)
- Type
- protein_coding_gene
- Location
- Chr: 23 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Acts upstream of or within neuron differentiation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in brain; eye; fin; integument; and muscle. Orthologous to human CTDSP2 (CTD small phosphatase 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:77714 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR004274 | FCP1 homology domain |
| Domain | IPR011948 | Dullard phosphatase domain, eukaryotic |
| Family | IPR040078 | CTD small RNA polymerase II polypeptide A phosphatase-like |
| Family | IPR050365 | Mitochondrial import inner membrane translocase subunit TIM50 |
| Homologous_superfamily | IPR023214 | HAD superfamily |
| Homologous_superfamily | IPR036412 | HAD-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | CTD small RNA polymerase II polypeptide A phosphatase-like | Dullard phosphatase domain, eukaryotic | FCP1 homology domain | HAD-like superfamily | HAD superfamily | Mitochondrial import inner membrane translocase subunit TIM50 |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PSV9 | InterPro | 196 | ||||||
| UniProtKB:Q6P3I6 | InterPro | 258 | ||||||
| UniProtKB:A0A8M2B916 | InterPro | 157 | ||||||
| UniProtKB:A0A8M3ANJ8 | InterPro | 155 | ||||||
| UniProtKB:A0AC58IIN7 | InterPro | 196 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ctdsp2-201
(1)
|
Ensembl | 2,138 nt | ||
| ncRNA |
ctdsp2-002
(1)
|
Ensembl | 668 nt | ||
| ncRNA |
ctdsp2-003
(1)
|
Ensembl | 863 nt |
Interactions and Pathways
No data available
| Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
|---|---|---|---|---|---|---|---|
| Ab1-ctdsp2 | polyclonal | Rabbit |
|
1 |
Plasmids
No data available
- Genome Browsers